Variant report
| Variant | rs10801279 |
|---|---|
| Chromosome Location | chr1:193996875-193996876 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr1:193990094..193991788-chr1:193994574..193997368,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs10737634 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10737635 | 0.97[AFR][1000 genomes];0.89[ASN][1000 genomes] |
| rs10921478 | 0.94[AFR][1000 genomes];0.85[ASN][1000 genomes] |
| rs12239212 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs16836057 | 0.87[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs2031144 | 0.90[AFR][1000 genomes] |
| rs608100 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs616204 | 0.94[EUR][1000 genomes] |
| rs617952 | 0.94[EUR][1000 genomes] |
| rs618961 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs619489 | 0.83[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs629872 | 0.90[EUR][1000 genomes] |
| rs643380 | 0.82[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs646090 | 0.94[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs650350 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs652268 | 0.81[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs659059 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs67104929 | 0.85[ASN][1000 genomes] |
| rs681469 | 0.81[AMR][1000 genomes];0.92[EUR][1000 genomes] |
| rs958096 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008266 | chr1:193550185-194481053 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv872834 | chr1:193889533-194482304 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| 3 | nsv548664 | chr1:193938944-194000953 | Enhancers Weak transcription ZNF genes & repeats Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:193995400-193998200 | Enhancers | Liver | Liver |
