Variant report

Variant	rs1073830
Chromosome Location	chr12:106279161-106279162
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10507204	0.81[ASN][1000 genomes]
rs12313607	1.00[ASN][1000 genomes]
rs12827357	0.97[ASN][1000 genomes]
rs1816038	0.94[ASN][1000 genomes]
rs1862030	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2374555	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2374556	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34139704	1.00[ASN][1000 genomes]
rs34427484	0.81[ASN][1000 genomes]
rs34642982	0.94[ASN][1000 genomes]
rs35570216	0.81[ASN][1000 genomes]
rs35656021	0.81[ASN][1000 genomes]
rs35669307	0.97[ASN][1000 genomes]
rs61940130	0.97[ASN][1000 genomes]
rs7956811	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106276400-106281600	Weak transcription	HSMMtube	muscle
2	chr12:106276600-106282200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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