Variant report

Variant	rs12827357
Chromosome Location	chr12:106291946-106291947
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10507204	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1073830	0.97[ASN][1000 genomes]
rs12313607	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12832870	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1345546	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1816038	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1819965	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs1862030	1.00[ASN][1000 genomes]
rs2374555	0.91[ASN][1000 genomes]
rs2374556	0.91[ASN][1000 genomes]
rs34139704	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34427484	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs34642982	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35464554	0.81[EUR][1000 genomes]
rs35570216	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35656021	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35669307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61940130	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106286400-106294400	Weak transcription	HSMMtube	muscle
2	chr12:106290000-106292200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr12:106290000-106293800	Enhancers	NHEK	skin
4	chr12:106290200-106292000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr12:106290200-106292800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr12:106290400-106292000	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr12:106291000-106292600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr12:106291800-106292000	Enhancers	HUES48 Cell Line	embryonic stem cell
9	chr12:106291800-106292000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr12:106291800-106292200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr12:106291800-106292200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:106291800-106292400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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