Variant report

Variant	rs12313607
Chromosome Location	chr12:106279151-106279152
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10507204	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1073830	1.00[ASN][1000 genomes]
rs12827357	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1345546	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1816038	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1862030	0.97[ASN][1000 genomes]
rs2374555	0.94[ASN][1000 genomes]
rs2374556	0.94[ASN][1000 genomes]
rs34139704	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34427484	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34642982	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35464554	0.83[EUR][1000 genomes]
rs35570216	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35656021	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35669307	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61940130	0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7956811	1.00[CHB][hapmap];0.85[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106276400-106281600	Weak transcription	HSMMtube	muscle
2	chr12:106276600-106282200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links