Variant report

Variant	rs10738400
Chromosome Location	chr9:15538710-15538711
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:15538062..15540509-chr9:15552565..15554442,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000164989	Chromatin interaction

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1039813	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1039814	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10481557	0.85[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10756670	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10756671	0.90[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10756672	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10756674	0.84[EUR][1000 genomes]
rs10756676	0.82[EUR][1000 genomes]
rs10756677	0.82[EUR][1000 genomes]
rs10756678	0.82[EUR][1000 genomes]
rs10756679	0.81[EUR][1000 genomes]
rs10756687	0.81[EUR][1000 genomes]
rs10810399	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10810400	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10810401	0.86[EUR][1000 genomes]
rs10810402	0.84[EUR][1000 genomes]
rs10810405	0.80[EUR][1000 genomes]
rs10810408	0.82[EUR][1000 genomes]
rs10810409	0.81[EUR][1000 genomes]
rs10962064	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10962065	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10962066	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962070	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10962072	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs10962073	0.85[EUR][1000 genomes]
rs10962098	0.82[EUR][1000 genomes]
rs10962099	0.82[EUR][1000 genomes]
rs10962110	0.80[EUR][1000 genomes]
rs12340969	0.80[EUR][1000 genomes]
rs13291638	0.82[EUR][1000 genomes]
rs1533040	0.81[EUR][1000 genomes]
rs1812686	0.83[EUR][1000 genomes]
rs2055772	0.82[EUR][1000 genomes]
rs3955162	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4281189	0.85[EUR][1000 genomes]
rs4448380	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4740615	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4740619	0.81[EUR][1000 genomes]
rs4740620	0.81[EUR][1000 genomes]
rs4741515	0.81[EUR][1000 genomes]
rs4741517	0.82[EUR][1000 genomes]
rs4741519	0.81[EUR][1000 genomes]
rs4741529	0.80[EUR][1000 genomes]
rs7020760	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7020983	0.98[EUR][1000 genomes]
rs7044122	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7851323	0.88[ASN][1000 genomes]
rs7859780	0.82[EUR][1000 genomes]
rs7860623	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7863088	0.82[EUR][1000 genomes]
rs7874533	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9650677	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9696751	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv892625	chr9:15326251-16064850	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
2	nsv892626	chr9:15389610-15694690	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv892627	chr9:15397969-15909450	Enhancers Flanking Active TSS Strong transcription Weak transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv892629	chr9:15516375-15634326	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv3407839	chr9:15530438-15665653	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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