Variant report

Variant	rs10739862
Chromosome Location	chr9:105770875-105770876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10081671	0.91[CEU][hapmap]
rs10121466	1.00[CEU][hapmap]
rs10739860	0.82[EUR][1000 genomes]
rs10739861	1.00[CEU][hapmap];0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10820333	0.81[CEU][hapmap];0.81[YRI][hapmap]
rs10820334	1.00[CEU][hapmap]
rs10990412	0.82[CHB][hapmap]
rs10990417	1.00[CHB][hapmap]
rs10990418	0.82[CHB][hapmap]
rs10990420	1.00[CHB][hapmap]
rs10990421	1.00[CHB][hapmap]
rs10990433	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10990437	0.81[CEU][hapmap];0.81[YRI][hapmap]
rs1107538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs1107540	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs12057008	1.00[CHB][hapmap]
rs12057090	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12235843	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12237588	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13289480	0.84[CEU][hapmap]
rs13291989	0.80[CEU][hapmap]
rs1572918	0.84[CEU][hapmap];0.87[YRI][hapmap]
rs1592242	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs16922372	1.00[CHB][hapmap]
rs16922374	0.84[CHB][hapmap]
rs16922376	0.84[CHB][hapmap]
rs16922388	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16922403	1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs1934999	0.84[CHB][hapmap]
rs2185583	1.00[CEU][hapmap];0.92[YRI][hapmap]
rs2211278	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap]
rs2211279	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs2298047	1.00[CHB][hapmap]
rs2298048	1.00[CHB][hapmap]
rs2298049	1.00[CHB][hapmap]
rs2298050	1.00[CHB][hapmap]
rs2298051	1.00[CHB][hapmap]
rs2298052	1.00[CHB][hapmap]
rs3763636	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs4292749	0.81[CEU][hapmap];0.81[YRI][hapmap]
rs4400449	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs4469521	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4471114	0.81[CEU][hapmap]
rs7023360	0.81[CEU][hapmap];0.85[YRI][hapmap]
rs7028935	1.00[CEU][hapmap]
rs7035058	0.84[CEU][hapmap]
rs7468522	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs7856837	1.00[CEU][hapmap]
rs7858193	1.00[CEU][hapmap]
rs7861311	1.00[CEU][hapmap]
rs7874072	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs947186	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs947187	1.00[CEU][hapmap];0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs947188	1.00[CEU][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:23 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893656	chr9:105625399-105853222	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1051059	chr9:105643281-105863176	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1047506	chr9:105643281-105866457	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv917223	chr9:105658139-105868400	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1053184	chr9:105658175-105860580	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv540186	chr9:105658175-105860580	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	esv2762824	chr9:105662920-105866457	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv893657	chr9:105704669-105837587	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1036220	chr9:105707435-105810142	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
10	nsv466455	chr9:105707984-105999196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv1051679	chr9:105714019-105774107	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	nsv516844	chr9:105718090-105999196	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv1046469	chr9:105725107-105981616	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv540187	chr9:105725107-105981616	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
15	nsv615037	chr9:105756213-105884764	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
16	nsv615038	chr9:105758477-105815315	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
17	nsv893658	chr9:105758477-105825222	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
18	nsv1039024	chr9:105763003-105813170	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
19	nsv1039589	chr9:105763418-105822396	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
20	esv2829916	chr9:105764116-105800243	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
21	nsv615039	chr9:105764116-105800243	Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
22	esv1841664	chr9:105770038-105780925	Inactive region	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
23	nsv1053646	chr9:105770158-105822396	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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