Variant report

Variant	rs1592242
Chromosome Location	chr9:105748480-105748481
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10081671	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs10121466	0.84[ASW][hapmap];0.92[CEU][hapmap];0.87[TSI][hapmap]
rs1027262	1.00[ASN][1000 genomes]
rs10739860	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10739861	0.91[CEU][hapmap];0.85[YRI][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739862	0.91[CEU][hapmap]
rs10820334	0.84[ASW][hapmap];0.92[CEU][hapmap]
rs1107538	0.92[CEU][hapmap]
rs1107540	0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs1388924	1.00[ASN][1000 genomes]
rs2185583	0.92[CEU][hapmap]
rs2211278	0.88[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.82[TSI][hapmap]
rs2211279	0.84[CEU][hapmap];1.00[GIH][hapmap];0.82[TSI][hapmap]
rs4469521	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61019795	1.00[ASN][1000 genomes]
rs62574366	1.00[ASN][1000 genomes]
rs62575431	1.00[ASN][1000 genomes]
rs7028935	0.92[CEU][hapmap];0.81[YRI][hapmap]
rs7468522	0.92[CEU][hapmap]
rs7856837	0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap]
rs7858193	0.95[CEU][hapmap];0.86[YRI][hapmap]
rs7861311	0.91[CEU][hapmap];0.86[YRI][hapmap]
rs7874072	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843274	1.00[ASN][1000 genomes]
rs947186	0.84[ASW][hapmap];0.92[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947187	0.92[CEU][hapmap];0.81[YRI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947188	0.92[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054263	chr9:105570212-105754741	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv893656	chr9:105625399-105853222	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1051059	chr9:105643281-105863176	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1047506	chr9:105643281-105866457	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv917223	chr9:105658139-105868400	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv1053184	chr9:105658175-105860580	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	nsv540186	chr9:105658175-105860580	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	esv2762824	chr9:105662920-105866457	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
9	nsv1035787	chr9:105676708-105751859	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	esv2761549	chr9:105676720-105751862	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv893657	chr9:105704669-105837587	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
12	nsv1036220	chr9:105707435-105810142	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
13	nsv466455	chr9:105707984-105999196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv1051679	chr9:105714019-105774107	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
15	nsv516844	chr9:105718090-105999196	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
16	nsv1046469	chr9:105725107-105981616	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
17	nsv540187	chr9:105725107-105981616	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
18	esv1835512	chr9:105732153-105761490	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
19	nsv1043424	chr9:105743838-105763057	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:105747400-105749200	Enhancers	HUES6 Cell Line	embryonic stem cell
2	chr9:105747800-105748600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr9:105747800-105748800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr9:105747800-105749200	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr9:105748400-105749200	Enhancers	H1 Cell Line	embryonic stem cell
6	chr9:105748400-105749200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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