Variant report

Variant	rs10820334
Chromosome Location	chr9:105763003-105763004
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10081671	0.82[ASW][hapmap];0.92[CEU][hapmap];0.87[MKK][hapmap]
rs10121466	1.00[ASW][hapmap];1.00[CEU][hapmap];0.82[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap]
rs10739860	0.86[EUR][1000 genomes]
rs10739861	1.00[CEU][hapmap];0.90[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10739862	1.00[CEU][hapmap]
rs1107538	1.00[CEU][hapmap]
rs1107540	0.92[ASW][hapmap];0.96[CEU][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap]
rs1388924	1.00[ASN][1000 genomes]
rs1592242	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2185583	1.00[CEU][hapmap]
rs2211278	0.92[ASW][hapmap];0.96[CEU][hapmap];0.84[LWK][hapmap];0.81[MKK][hapmap]
rs2211279	0.91[ASW][hapmap];0.92[CEU][hapmap];0.82[LWK][hapmap];0.81[MKK][hapmap]
rs4469521	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4471114	0.84[CEU][hapmap]
rs61019795	1.00[ASN][1000 genomes]
rs62574366	1.00[ASN][1000 genomes]
rs62575431	1.00[ASN][1000 genomes]
rs7028935	1.00[CEU][hapmap];0.95[YRI][hapmap]
rs7468522	1.00[CEU][hapmap]
rs7856837	0.91[ASW][hapmap];1.00[CEU][hapmap];0.81[LWK][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap]
rs7858193	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs7861311	1.00[CEU][hapmap];0.90[YRI][hapmap]
rs7874072	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs843274	1.00[ASN][1000 genomes]
rs947186	1.00[ASW][hapmap];1.00[CEU][hapmap];0.97[MKK][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947187	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947188	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893656	chr9:105625399-105853222	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv1051059	chr9:105643281-105863176	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1047506	chr9:105643281-105866457	Enhancers Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv917223	chr9:105658139-105868400	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv1053184	chr9:105658175-105860580	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
6	nsv540186	chr9:105658175-105860580	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
7	esv2762824	chr9:105662920-105866457	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv893657	chr9:105704669-105837587	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
9	nsv1036220	chr9:105707435-105810142	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
10	nsv466455	chr9:105707984-105999196	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
11	nsv1051679	chr9:105714019-105774107	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases
12	nsv516844	chr9:105718090-105999196	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
13	nsv1046469	chr9:105725107-105981616	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
14	nsv540187	chr9:105725107-105981616	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
15	nsv1043424	chr9:105743838-105763057	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
16	nsv615037	chr9:105756213-105884764	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
17	nsv615038	chr9:105758477-105815315	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
18	nsv893658	chr9:105758477-105825222	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
19	nsv1039024	chr9:105763003-105813170	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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