Variant report

Variant	rs1074603
Chromosome Location	chr3:154958084-154958085
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAZ	chr3:154957931-154958114	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000241336	TF binding region

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11917696	1.00[AMR][1000 genomes]
rs11918090	0.97[AFR][1000 genomes]
rs11919050	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11921164	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11921331	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922803	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11924908	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11929370	1.00[AMR][1000 genomes]
rs16824720	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824812	1.00[AMR][1000 genomes]
rs16824820	1.00[AMR][1000 genomes]
rs1813735	1.00[AMR][1000 genomes]
rs1843300	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs41517054	1.00[AMR][1000 genomes]
rs4568083	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58943435	1.00[AMR][1000 genomes]
rs60165227	1.00[AMR][1000 genomes]
rs60786448	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs723605	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995862	1.00[AFR][1000 genomes]
rs73873108	1.00[AMR][1000 genomes]
rs73873119	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv829762	chr3:154879350-155052986	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154952000-154960800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:154952800-154958600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr3:154957000-154958400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
4	chr3:154957000-154959600	Enhancers	Fetal Muscle Trunk	muscle
5	chr3:154957200-154958800	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr3:154957400-154959600	Enhancers	Fetal Muscle Leg	muscle
7	chr3:154957400-154962200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:154957600-154958800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
9	chr3:154957600-154961200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
10	chr3:154957800-154959400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr3:154957800-154980200	Weak transcription	Psoas Muscle	Psoas
12	chr3:154958000-154958800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr3:154958000-154959600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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