Variant report

Variant	rs58943435
Chromosome Location	chr3:154994240-154994241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:154986811..154989057-chr3:154993128..154995510,2	K562	blood:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1074603	1.00[AMR][1000 genomes]
rs11917696	1.00[AMR][1000 genomes]
rs11919050	1.00[AMR][1000 genomes]
rs11921164	1.00[AMR][1000 genomes]
rs11921331	1.00[AMR][1000 genomes]
rs11922803	1.00[AMR][1000 genomes]
rs11924908	1.00[AMR][1000 genomes]
rs11929370	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824720	1.00[AMR][1000 genomes]
rs16824779	0.91[AFR][1000 genomes]
rs16824812	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824820	1.00[AMR][1000 genomes]
rs1813735	1.00[AMR][1000 genomes]
rs1843300	1.00[AMR][1000 genomes]
rs41517054	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4568083	1.00[AMR][1000 genomes]
rs60165227	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60786448	1.00[AMR][1000 genomes]
rs723605	1.00[AMR][1000 genomes]
rs73873108	1.00[AMR][1000 genomes]
rs73873119	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
4	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv829762	chr3:154879350-155052986	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154971600-154996200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:154981200-154995200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:154987400-154996200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:154990400-154995600	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr3:154992800-154996200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr3:154993800-154995000	Enhancers	K562	blood
7	chr3:154994000-154994800	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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