Variant report

Variant	rs1843300
Chromosome Location	chr3:154960015-154960016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1074603	1.00[ASW][hapmap];0.86[LWK][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11917696	1.00[AMR][1000 genomes]
rs11918090	0.93[AFR][1000 genomes]
rs11919050	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11921164	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11921331	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11924908	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11929370	1.00[AMR][1000 genomes]
rs16824720	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16824812	1.00[AMR][1000 genomes]
rs16824820	1.00[AMR][1000 genomes]
rs1813735	1.00[AMR][1000 genomes]
rs41517054	1.00[AMR][1000 genomes]
rs4568083	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58943435	1.00[AMR][1000 genomes]
rs60165227	1.00[AMR][1000 genomes]
rs60786448	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs723605	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72995862	0.97[AFR][1000 genomes]
rs73873108	1.00[AMR][1000 genomes]
rs73873119	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534289	chr3:154535584-154987166	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv532663	chr3:154561578-154960353	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv999994	chr3:154579254-155175303	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv532664	chr3:154588346-155162615	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
5	nsv1000753	chr3:154848433-155207022	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
6	nsv536773	chr3:154848433-155207022	Enhancers Strong transcription Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv829762	chr3:154879350-155052986	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:154952000-154960800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr3:154957400-154962200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr3:154957600-154961200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
4	chr3:154957800-154980200	Weak transcription	Psoas Muscle	Psoas
5	chr3:154958400-154961200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr3:154958400-154962400	Enhancers	NHLF	lung
7	chr3:154958600-154960400	Enhancers	Fetal Lung	lung
8	chr3:154959200-154961000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr3:154959200-154962200	Weak transcription	Fetal Brain Male	brain
10	chr3:154959400-154960200	Strong transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:154959400-154961400	Enhancers	Osteobl	bone
12	chr3:154959400-154962200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr3:154959400-154969200	Weak transcription	Skeletal Muscle Female	skeletal muscle
14	chr3:154959600-154960800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:154960000-154960200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:154960000-154960400	Flanking Active TSS	NHDF-Ad	bronchial
17	chr3:154960000-154961600	Enhancers	HSMM	muscle
18	chr3:154960000-154962600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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