Variant report

Variant	rs10748302
Chromosome Location	chr12:41744522-41744523
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 135 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:134)

rs_ID	r²[population]
rs1000147	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10467086	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10506186	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10506187	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10506188	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10506189	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10735991	0.99[EUR][1000 genomes]
rs10748300	0.95[CEU][hapmap];0.99[EUR][1000 genomes]
rs10748301	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785236	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10785237	0.98[EUR][1000 genomes]
rs10785238	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10785239	0.98[EUR][1000 genomes]
rs10785240	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785241	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785242	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785243	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785244	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785245	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10785247	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785248	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785249	0.99[EUR][1000 genomes]
rs10785250	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785252	0.99[EUR][1000 genomes]
rs10785254	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785255	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs10785256	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10785269	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs10880038	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10880039	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10880040	0.98[EUR][1000 genomes]
rs10880042	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10880043	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10880044	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10880046	0.97[EUR][1000 genomes]
rs10880047	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10880048	0.97[EUR][1000 genomes]
rs10880049	0.97[EUR][1000 genomes]
rs10880050	0.97[EUR][1000 genomes]
rs10880051	0.94[EUR][1000 genomes]
rs10880052	0.99[EUR][1000 genomes]
rs10880053	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10880055	0.99[EUR][1000 genomes]
rs10880056	1.00[EUR][1000 genomes]
rs10880057	0.99[EUR][1000 genomes]
rs10880058	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs10880059	0.99[EUR][1000 genomes]
rs10880061	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs10880062	1.00[EUR][1000 genomes]
rs10880077	0.83[YRI][hapmap]
rs10880081	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs10880082	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10880087	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs10880088	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11180837	0.97[EUR][1000 genomes]
rs11180838	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs11180842	0.99[EUR][1000 genomes]
rs11180846	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs11180847	0.99[EUR][1000 genomes]
rs11180848	0.99[EUR][1000 genomes]
rs11180853	0.87[YRI][hapmap]
rs11180857	0.87[YRI][hapmap]
rs11180858	0.87[YRI][hapmap]
rs11180861	0.82[YRI][hapmap]
rs11180865	0.87[YRI][hapmap]
rs11180880	0.87[YRI][hapmap]
rs11180881	0.87[YRI][hapmap]
rs11180905	0.82[YRI][hapmap]
rs11180908	0.86[YRI][hapmap]
rs11180936	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11180943	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs11180961	0.85[JPT][hapmap]
rs12315067	0.99[EUR][1000 genomes]
rs12368074	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12372586	0.86[CHB][hapmap];1.00[JPT][hapmap]
rs1317540	0.99[EUR][1000 genomes]
rs1317541	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1405550	0.99[EUR][1000 genomes]
rs1405551	0.99[EUR][1000 genomes]
rs1405557	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1465072	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1609058	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1609059	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1609060	0.98[EUR][1000 genomes]
rs1609061	0.98[EUR][1000 genomes]
rs169564	0.85[JPT][hapmap]
rs17579291	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs1918219	0.99[EUR][1000 genomes]
rs1918220	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs1918222	0.99[EUR][1000 genomes]
rs1918223	0.98[EUR][1000 genomes]
rs1918225	0.99[EUR][1000 genomes]
rs1918228	0.99[EUR][1000 genomes]
rs1918236	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs1918237	0.98[EUR][1000 genomes]
rs1918238	0.98[EUR][1000 genomes]
rs1949947	0.98[EUR][1000 genomes]
rs1949948	0.98[EUR][1000 genomes]
rs1949949	0.94[EUR][1000 genomes]
rs1949950	0.94[EUR][1000 genomes]
rs2141105	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2177974	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2204591	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs2405910	0.99[EUR][1000 genomes]
rs2608709	0.91[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs2730812	1.00[JPT][hapmap]
rs2730831	0.85[JPT][hapmap]
rs285551	0.85[JPT][hapmap]
rs285559	1.00[JPT][hapmap]
rs285596	1.00[JPT][hapmap]
rs285597	0.85[JPT][hapmap]
rs287087	1.00[JPT][hapmap]
rs2897266	0.98[EUR][1000 genomes]
rs2897267	0.99[EUR][1000 genomes]
rs3110189	0.90[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs4430580	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs4558215	0.87[YRI][hapmap]
rs4768345	0.98[EUR][1000 genomes]
rs4768346	0.98[EUR][1000 genomes]
rs4768347	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs4768348	0.95[CEU][hapmap];0.98[EUR][1000 genomes]
rs4768355	0.91[CHB][hapmap];1.00[JPT][hapmap]
rs7133806	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7138183	0.99[EUR][1000 genomes]
rs7298511	0.95[CEU][hapmap];0.99[EUR][1000 genomes]
rs7298953	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7299325	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7304306	0.97[EUR][1000 genomes]
rs7310743	0.99[EUR][1000 genomes]
rs7315905	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs7959175	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs7962343	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs941190	1.00[CEU][hapmap];0.99[EUR][1000 genomes]
rs9652046	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41741200-41749400	Weak transcription	Brain Germinal Matrix	brain
2	chr12:41744400-41744800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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