Variant report

Variant	rs10880077
Chromosome Location	chr12:41842759-41842760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:41753620..41755968-chr12:41842392..41845001,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10748302	0.83[YRI][hapmap]
rs11180853	1.00[YRI][hapmap]
rs11180857	1.00[YRI][hapmap]
rs11180858	1.00[YRI][hapmap]
rs11180861	1.00[YRI][hapmap]
rs11180865	1.00[YRI][hapmap]
rs11180880	1.00[YRI][hapmap]
rs11180881	1.00[YRI][hapmap]
rs11180905	1.00[YRI][hapmap]
rs11180908	1.00[YRI][hapmap]
rs12298084	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299762	0.92[EUR][1000 genomes]
rs12313532	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12314473	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322196	1.00[YRI][hapmap]
rs12322329	0.82[YRI][hapmap];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12423463	1.00[ASN][1000 genomes]
rs12424813	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs12817240	1.00[ASN][1000 genomes]
rs12826427	1.00[ASN][1000 genomes]
rs12826692	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs12828934	1.00[ASN][1000 genomes]
rs2254521	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2446145	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608698	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608699	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608713	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2730815	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2730825	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733288	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34753427	1.00[ASN][1000 genomes]
rs35366617	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35487549	1.00[ASN][1000 genomes]
rs4558215	1.00[YRI][hapmap]
rs7133340	0.92[EUR][1000 genomes]
rs9652046	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41829600-41860600	Weak transcription	Aorta	Aorta
2	chr12:41838000-41852400	Weak transcription	Fetal Brain Male	brain
3	chr12:41838200-41852400	Weak transcription	Colon Smooth Muscle	Colon
4	chr12:41838400-41851600	Weak transcription	Brain Germinal Matrix	brain

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