Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10880077	1.00[ASN][1000 genomes]
rs12298084	1.00[ASN][1000 genomes]
rs12313532	1.00[ASN][1000 genomes]
rs12314473	1.00[ASN][1000 genomes]
rs12322329	1.00[ASN][1000 genomes]
rs12423463	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12424813	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817240	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12826427	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12826692	1.00[ASN][1000 genomes]
rs12828934	1.00[ASN][1000 genomes]
rs2254521	1.00[ASN][1000 genomes]
rs2446145	1.00[ASN][1000 genomes]
rs2608698	1.00[ASN][1000 genomes]
rs2608699	1.00[ASN][1000 genomes]
rs2608713	1.00[ASN][1000 genomes]
rs2730815	1.00[ASN][1000 genomes]
rs2730825	1.00[ASN][1000 genomes]
rs2733288	1.00[ASN][1000 genomes]
rs34753427	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35366617	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv826349	chr12:41878846-41911495	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41869600-41905200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41877400-41903600	Weak transcription	Ovary	ovary
3	chr12:41881800-41887000	Weak transcription	Brain Germinal Matrix	brain
4	chr12:41886200-41887400	Enhancers	Brain Anterior Caudate	brain
5	chr12:41886200-41887400	Enhancers	Brain Substantia Nigra	brain
6	chr12:41886200-41891800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr12:41886600-41887000	Active TSS	Brain Hippocampus Middle	brain
8	chr12:41886600-41887800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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