Variant report
| Variant | rs34753427 |
|---|---|
| Chromosome Location | chr12:41875186-41875187 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:41867305..41870215-chr12:41872382..41875248,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000257228 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10880077 | 1.00[ASN][1000 genomes] |
| rs12298084 | 1.00[ASN][1000 genomes] |
| rs12313532 | 1.00[ASN][1000 genomes] |
| rs12314473 | 1.00[ASN][1000 genomes] |
| rs12322329 | 1.00[ASN][1000 genomes] |
| rs12423463 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12424813 | 1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12817240 | 1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12826427 | 0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12826692 | 1.00[ASN][1000 genomes] |
| rs12828934 | 1.00[ASN][1000 genomes] |
| rs2254521 | 1.00[ASN][1000 genomes] |
| rs2446145 | 1.00[ASN][1000 genomes] |
| rs2608698 | 1.00[ASN][1000 genomes] |
| rs2608699 | 1.00[ASN][1000 genomes] |
| rs2608713 | 1.00[ASN][1000 genomes] |
| rs2730815 | 1.00[ASN][1000 genomes] |
| rs2730825 | 1.00[ASN][1000 genomes] |
| rs2733288 | 1.00[ASN][1000 genomes] |
| rs35366617 | 1.00[ASN][1000 genomes] |
| rs35487549 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832384 | chr12:41772648-41971430 | Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | esv3337301 | chr12:41851654-42093677 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:41869600-41905200 | Weak transcription | Colon Smooth Muscle | Colon |
