Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10880077	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12298084	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12299762	0.88[CEU][hapmap];1.00[EUR][1000 genomes]
rs12314473	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322329	0.88[CEU][hapmap];0.80[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12423463	1.00[ASN][1000 genomes]
rs12424813	1.00[ASN][1000 genomes]
rs12817240	1.00[ASN][1000 genomes]
rs12826427	1.00[ASN][1000 genomes]
rs12826692	1.00[ASN][1000 genomes]
rs12828934	1.00[ASN][1000 genomes]
rs2254521	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2446145	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608698	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608699	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608713	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2730815	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2730825	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2733288	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34753427	1.00[ASN][1000 genomes]
rs35366617	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35487549	1.00[ASN][1000 genomes]
rs7133340	0.88[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41860200-41869200	Weak transcription	Colon Smooth Muscle	Colon
2	chr12:41861400-41870000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:41861400-41870400	Weak transcription	Brain Anterior Caudate	brain
4	chr12:41862000-41869800	Weak transcription	Brain Germinal Matrix	brain
5	chr12:41862000-41870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:41862200-41869400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr12:41866800-41870400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:41867200-41869600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr12:41867400-41868000	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr12:41867400-41869600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr12:41867600-41869600	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr12:41867800-41868000	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr12:41867800-41868400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr12:41867800-41870000	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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