Variant report

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10880077	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs12298084	0.85[CEU][hapmap];1.00[ASN][1000 genomes]
rs12313532	1.00[ASN][1000 genomes]
rs12314473	1.00[ASN][1000 genomes]
rs12322329	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12423463	0.82[CEU][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12817240	1.00[CEU][hapmap];1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12826427	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12826692	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs12828934	1.00[ASN][1000 genomes]
rs2254521	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2446145	1.00[ASN][1000 genomes]
rs2608698	1.00[ASN][1000 genomes]
rs2608699	0.82[CEU][hapmap];1.00[ASN][1000 genomes]
rs2608713	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs2730812	1.00[MEX][hapmap]
rs2730815	1.00[ASN][1000 genomes]
rs2730825	1.00[ASN][1000 genomes]
rs2733288	1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs285559	1.00[MEX][hapmap]
rs285588	1.00[MEX][hapmap]
rs285596	1.00[MEX][hapmap]
rs287087	1.00[MEX][hapmap]
rs34753427	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35366617	1.00[ASN][1000 genomes]
rs35487549	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
2	nsv832384	chr12:41772648-41971430	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1037987	chr12:41815867-41840251	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:41823200-41829800	Weak transcription	Pancreatic Islets	Pancreatic Islet

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