Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10748302	0.87[YRI][hapmap]
rs10880077	1.00[YRI][hapmap]
rs11180853	1.00[YRI][hapmap]
rs11180858	1.00[YRI][hapmap]
rs11180861	1.00[YRI][hapmap]
rs11180865	1.00[YRI][hapmap]
rs11180880	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11180881	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11180898	0.83[AFR][1000 genomes]
rs11180905	1.00[YRI][hapmap]
rs11180908	1.00[YRI][hapmap]
rs12296173	0.83[AFR][1000 genomes]
rs12298084	0.87[YRI][hapmap]
rs12299757	1.00[EUR][1000 genomes]
rs12300045	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12308005	1.00[EUR][1000 genomes]
rs12317852	1.00[EUR][1000 genomes]
rs12318761	0.83[AFR][1000 genomes]
rs12320193	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12320978	0.91[AFR][1000 genomes]
rs12321550	0.83[AFR][1000 genomes]
rs12322196	0.87[YRI][hapmap]
rs4558215	1.00[YRI][hapmap]
rs9652045	0.94[EUR][1000 genomes]
rs9652046	1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832383	chr12:41693298-41846934	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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