Variant report

Variant	rs10749216
Chromosome Location	chr10:118229810-118229811
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10736250	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11814907	1.00[EUR][1000 genomes]
rs11817119	1.00[EUR][1000 genomes]
rs11819366	1.00[EUR][1000 genomes]
rs12241344	1.00[EUR][1000 genomes]
rs1431482	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1897519	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2163486	1.00[AMR][1000 genomes]
rs7083636	1.00[EUR][1000 genomes]
rs7893631	1.00[EUR][1000 genomes]
rs7902488	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118224400-118231200	Weak transcription	Pancreas	Pancrea
2	chr10:118226600-118232000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr10:118226600-118232000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr10:118227000-118232000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:118228800-118230000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:118228800-118231000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr10:118228800-118231400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr10:118229000-118230000	Genic enhancers	NHEK	skin
9	chr10:118229200-118230000	Genic enhancers	HMEC	breast
10	chr10:118229400-118230800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:118229600-118230000	Weak transcription	Placenta	Placenta
12	chr10:118229600-118232200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr10:118229800-118230200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr10:118229800-118230800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr10:118229800-118230800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr10:118229800-118232200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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