Variant report

Variant	rs11814907
Chromosome Location	chr10:118246492-118246493
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10736250	1.00[EUR][1000 genomes]
rs10749216	1.00[EUR][1000 genomes]
rs11817119	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11819366	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7893631	1.00[EUR][1000 genomes]
rs7902488	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832001	chr10:118138370-118315059	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11814907	CCDC19	trans	lymphoblastoid	seeQTL
rs11814907	SYCE1	trans	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:118238600-118249400	Weak transcription	HMEC	breast
2	chr10:118245000-118246800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr10:118245800-118246600	Enhancers	Fetal Muscle Leg	muscle
4	chr10:118245800-118246800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr10:118245800-118246800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:118245800-118246800	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr10:118245800-118246800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr10:118245800-118247000	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:118245800-118248200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:118246000-118246800	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr10:118246200-118247000	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr10:118246200-118247400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr10:118246200-118248200	Enhancers	Liver	Liver
14	chr10:118246400-118247200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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