Variant report

Variant	rs1075064
Chromosome Location	chr10:27857940-27857941
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10764713	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764714	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10829269	1.00[CEU][hapmap];0.82[CHB][hapmap];0.81[JPT][hapmap]
rs11015869	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11015877	0.92[ASN][1000 genomes]
rs11597728	1.00[CEU][hapmap];0.85[CHB][hapmap];0.90[JPT][hapmap]
rs1603019	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1908277	0.85[ASN][1000 genomes]
rs2505300	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs4293034	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4293035	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440934	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs903281	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27853000-27867400	Weak transcription	Aorta	Aorta
2	chr10:27853800-27858400	Weak transcription	Primary B cells from cord blood	blood
3	chr10:27855600-27860800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr10:27855600-27866800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:27856600-27858800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr10:27856600-27859200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
7	chr10:27856800-27858000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr10:27856800-27858600	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr10:27856800-27858800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
10	chr10:27856800-27858800	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr10:27857000-27858800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:27857200-27858200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
13	chr10:27857200-27858400	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:27857200-27858600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr10:27857200-27859200	Enhancers	Primary T cells fromperipheralblood	blood
16	chr10:27857800-27858600	Enhancers	Monocytes-CD14+_RO01746	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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