Variant report
| Variant | rs1603019 |
|---|---|
| Chromosome Location | chr10:27851743-27851744 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1075064 | 0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs10764700 | 0.80[EUR][1000 genomes] |
| rs10764701 | 0.80[EUR][1000 genomes] |
| rs10764703 | 0.80[EUR][1000 genomes] |
| rs10764704 | 0.80[EUR][1000 genomes] |
| rs10764705 | 0.80[EUR][1000 genomes] |
| rs10764706 | 0.80[EUR][1000 genomes] |
| rs10764709 | 0.80[EUR][1000 genomes] |
| rs10764713 | 0.98[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs10764714 | 0.95[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs10829270 | 0.80[EUR][1000 genomes] |
| rs10829272 | 0.80[EUR][1000 genomes] |
| rs10829273 | 0.80[EUR][1000 genomes] |
| rs10829275 | 0.80[EUR][1000 genomes] |
| rs11015869 | 0.86[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs11015874 | 0.82[ASN][1000 genomes] |
| rs11015877 | 0.88[ASN][1000 genomes] |
| rs1908277 | 0.81[ASN][1000 genomes] |
| rs34636144 | 0.80[EUR][1000 genomes] |
| rs34767495 | 0.80[EUR][1000 genomes] |
| rs4293034 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4293035 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4440934 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs66732057 | 0.80[EUR][1000 genomes] |
| rs7074813 | 0.80[EUR][1000 genomes] |
| rs7090506 | 0.80[EUR][1000 genomes] |
| rs7096275 | 0.80[EUR][1000 genomes] |
| rs72812124 | 0.80[EUR][1000 genomes] |
| rs903281 | 1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv550241 | chr10:27569521-28025771 | Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 27 gene(s) | inside rSNPs | diseases |
| 2 | nsv1045257 | chr10:27572440-27926946 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
| 3 | nsv1053952 | chr10:27659365-27915029 | Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 13 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:27835200-27852600 | Weak transcription | Aorta | Aorta |
