Variant report

Variant	rs10764709
Chromosome Location	chr10:27836576-27836577
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27835272..27837181-chr10:27838357..27840801,2	K562	blood:
2	chr10:27835272..27837597-chr10:27837775..27840904,4	K562	blood:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10741135	0.93[EUR][1000 genomes]
rs10764700	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10764701	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764703	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764704	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764706	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764707	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10764708	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829263	0.96[EUR][1000 genomes]
rs10829269	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10829270	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829272	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829273	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829274	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10829275	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11015869	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1157735	0.96[EUR][1000 genomes]
rs11597728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.95[JPT][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];0.96[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11598268	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11812227	0.91[EUR][1000 genomes]
rs11818763	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1603019	0.80[EUR][1000 genomes]
rs1748482	0.85[EUR][1000 genomes]
rs2477329	0.96[EUR][1000 genomes]
rs2477334	0.98[EUR][1000 genomes]
rs2477337	0.98[EUR][1000 genomes]
rs2505300	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap]
rs2505308	0.87[ASN][1000 genomes]
rs2505331	0.96[EUR][1000 genomes]
rs34636144	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34696735	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34767495	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4440934	0.80[EUR][1000 genomes]
rs56851979	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs584807	0.85[EUR][1000 genomes]
rs587093	0.85[EUR][1000 genomes]
rs590990	0.85[EUR][1000 genomes]
rs592818	0.91[EUR][1000 genomes]
rs594953	0.82[EUR][1000 genomes]
rs599641	0.85[EUR][1000 genomes]
rs625446	0.90[EUR][1000 genomes]
rs627663	0.94[EUR][1000 genomes]
rs660053	0.90[EUR][1000 genomes]
rs66732057	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs671279	0.83[EUR][1000 genomes]
rs683321	0.81[EUR][1000 genomes]
rs7071295	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7074813	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7079708	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7090506	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7096275	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs71487892	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs72812124	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7899596	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7915734	0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27794400-27837400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr10:27823000-27838200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:27823400-27836600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr10:27823600-27838200	Weak transcription	Pancreas	Pancrea
5	chr10:27824600-27838000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr10:27824800-27836600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:27825000-27836600	Weak transcription	Gastric	stomach
8	chr10:27826200-27836600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr10:27826200-27838000	Weak transcription	Ovary	ovary
10	chr10:27826400-27841800	Weak transcription	HSMMtube	muscle
11	chr10:27826600-27838200	Weak transcription	Spleen	Spleen
12	chr10:27827200-27836800	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:27827200-27838200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr10:27827400-27839600	Weak transcription	Brain Substantia Nigra	brain
15	chr10:27827800-27836600	Weak transcription	Fetal Intestine Large	intestine
16	chr10:27828000-27839000	Weak transcription	Fetal Lung	lung
17	chr10:27828400-27838400	Weak transcription	NH-A	brain
18	chr10:27828600-27836600	Weak transcription	Duodenum Mucosa	Duodenum
19	chr10:27831400-27836800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
20	chr10:27831400-27838000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr10:27831800-27838000	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr10:27832000-27838200	Weak transcription	HUVEC	blood vessel
23	chr10:27832000-27839600	Weak transcription	Esophagus	oesophagus
24	chr10:27832000-27840800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr10:27832200-27837000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr10:27832400-27836600	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr10:27832400-27836600	Weak transcription	Primary B cells from cord blood	blood
28	chr10:27832400-27838200	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr10:27832400-27838200	Weak transcription	GM12878-XiMat	blood
30	chr10:27832400-27838800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr10:27833600-27840400	Weak transcription	Primary T cells from cord blood	blood
32	chr10:27833800-27836800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:27834200-27836800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr10:27834400-27840000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr10:27834600-27836800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr10:27834800-27838600	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr10:27834800-27839600	Weak transcription	Right Ventricle	heart
38	chr10:27835000-27836600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
39	chr10:27835000-27836600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr10:27835000-27836600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr10:27835000-27837000	Weak transcription	Liver	Liver
42	chr10:27835000-27837800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr10:27835000-27838400	Weak transcription	Thymus	Thymus
44	chr10:27835000-27838600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr10:27835000-27839000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr10:27835000-27839600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
47	chr10:27835000-27839800	Weak transcription	Left Ventricle	heart
48	chr10:27835000-27840800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
49	chr10:27835000-27841600	Weak transcription	NHEK	skin
50	chr10:27835000-27847200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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