Variant report

Variant	rs625446
Chromosome Location	chr10:27759906-27759907
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10741135	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10764700	0.90[EUR][1000 genomes]
rs10764701	0.90[EUR][1000 genomes]
rs10764703	0.90[EUR][1000 genomes]
rs10764704	0.90[EUR][1000 genomes]
rs10764705	0.90[EUR][1000 genomes]
rs10764706	0.90[EUR][1000 genomes]
rs10764707	0.91[EUR][1000 genomes]
rs10764708	0.91[EUR][1000 genomes]
rs10764709	0.90[EUR][1000 genomes]
rs10829263	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10829269	1.00[CEU][hapmap];0.91[CHB][hapmap];0.80[JPT][hapmap];0.89[EUR][1000 genomes]
rs10829270	0.90[EUR][1000 genomes]
rs10829272	0.90[EUR][1000 genomes]
rs10829273	0.90[EUR][1000 genomes]
rs10829274	0.91[EUR][1000 genomes]
rs10829275	0.90[EUR][1000 genomes]
rs11015813	0.83[ASN][1000 genomes]
rs11015869	0.87[EUR][1000 genomes]
rs1157735	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11597728	1.00[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.90[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes]
rs11598268	0.89[EUR][1000 genomes]
rs11812227	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11818763	0.89[EUR][1000 genomes]
rs1748482	0.86[EUR][1000 genomes]
rs2477329	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2477334	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2477337	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2505300	0.91[CHB][hapmap];0.92[CHD][hapmap];0.81[JPT][hapmap]
rs2505331	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34636144	0.90[EUR][1000 genomes]
rs34696735	0.81[EUR][1000 genomes]
rs34767495	0.90[EUR][1000 genomes]
rs56851979	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs584807	0.86[EUR][1000 genomes]
rs587093	0.86[EUR][1000 genomes]
rs590990	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs592818	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs594953	0.89[EUR][1000 genomes]
rs599641	0.86[EUR][1000 genomes]
rs627663	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs660053	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs66732057	0.90[EUR][1000 genomes]
rs671279	0.88[EUR][1000 genomes]
rs683321	0.90[EUR][1000 genomes]
rs7071295	0.87[EUR][1000 genomes]
rs7074813	0.90[EUR][1000 genomes]
rs7079708	0.89[EUR][1000 genomes]
rs7090506	0.90[EUR][1000 genomes]
rs7096275	0.90[EUR][1000 genomes]
rs71487892	0.87[EUR][1000 genomes]
rs72812124	0.90[EUR][1000 genomes]
rs7899596	0.89[EUR][1000 genomes]
rs7915734	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27759400-27760400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr10:27759800-27760000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr10:27759800-27760000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:27759800-27760000	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr10:27759800-27760200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr10:27759800-27760200	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr10:27759800-27760400	Enhancers	H1 Cell Line	embryonic stem cell
8	chr10:27759800-27760600	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr10:27759800-27760800	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:27759800-27761200	Enhancers	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links