Variant report

Variant	rs11015813
Chromosome Location	chr10:27774276-27774277
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27773891..27776810-chr10:27782060..27784167,2	MCF-7	breast:
2	chr10:27764701..27767578-chr10:27773110..27774653,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10741135	0.91[ASN][1000 genomes]
rs10829263	0.90[ASN][1000 genomes]
rs10829269	0.86[CHB][hapmap];0.81[JPT][hapmap]
rs11015814	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1157735	0.90[ASN][1000 genomes]
rs11597728	0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[JPT][hapmap]
rs11812227	0.91[ASN][1000 genomes]
rs12220158	0.94[ASN][1000 genomes]
rs2477329	0.90[ASN][1000 genomes]
rs2477334	0.91[ASN][1000 genomes]
rs2477337	0.90[ASN][1000 genomes]
rs2477338	0.82[ASN][1000 genomes]
rs2505300	0.86[CHB][hapmap];0.90[CHD][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs2505331	0.90[ASN][1000 genomes]
rs56851979	0.90[ASN][1000 genomes]
rs590990	0.85[ASN][1000 genomes]
rs592818	0.91[ASN][1000 genomes]
rs61285402	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs625446	0.83[ASN][1000 genomes]
rs627663	0.91[ASN][1000 genomes]
rs660053	0.88[ASN][1000 genomes]
rs7915734	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27770200-27775600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:27771600-27779800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:27772600-27777600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:27772800-27775400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:27773000-27774400	Weak transcription	HMEC	breast
6	chr10:27773000-27775000	Weak transcription	Esophagus	oesophagus
7	chr10:27773000-27775400	Enhancers	NHEK	skin
8	chr10:27773000-27775600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:27773600-27775200	Enhancers	Stomach Smooth Muscle	stomach
10	chr10:27773800-27778800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr10:27774000-27775200	Enhancers	Colon Smooth Muscle	Colon
12	chr10:27774000-27775400	Enhancers	Rectal Smooth Muscle	rectum

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