Variant report

Variant	rs12220158
Chromosome Location	chr10:27786102-27786103
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10741135	0.85[ASN][1000 genomes]
rs10829263	0.90[ASN][1000 genomes]
rs11015813	0.94[ASN][1000 genomes]
rs11015814	0.97[ASN][1000 genomes]
rs1157735	0.90[ASN][1000 genomes]
rs11812227	0.85[ASN][1000 genomes]
rs2477329	0.90[ASN][1000 genomes]
rs2477334	0.91[ASN][1000 genomes]
rs2477337	0.90[ASN][1000 genomes]
rs2477338	0.82[ASN][1000 genomes]
rs2505300	0.80[ASN][1000 genomes]
rs2505331	0.90[ASN][1000 genomes]
rs56851979	0.90[ASN][1000 genomes]
rs590990	0.82[ASN][1000 genomes]
rs592818	0.85[ASN][1000 genomes]
rs61285402	0.97[ASN][1000 genomes]
rs627663	0.85[ASN][1000 genomes]
rs660053	0.83[ASN][1000 genomes]
rs7915734	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27780400-27789000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr10:27780800-27789200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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