Variant report

Variant	rs7915734
Chromosome Location	chr10:27774501-27774502
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:27773891..27776810-chr10:27782060..27784167,2	MCF-7	breast:
2	chr10:27764701..27767578-chr10:27773110..27774653,2	K562	blood:

Extended variants
information (count: 63 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10741135	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10764700	0.93[EUR][1000 genomes]
rs10764701	0.93[EUR][1000 genomes]
rs10764703	0.93[EUR][1000 genomes]
rs10764704	0.93[EUR][1000 genomes]
rs10764705	0.93[EUR][1000 genomes]
rs10764706	0.93[EUR][1000 genomes]
rs10764707	0.93[EUR][1000 genomes]
rs10764708	0.93[EUR][1000 genomes]
rs10764709	0.93[EUR][1000 genomes]
rs10829263	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10829269	1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[JPT][hapmap];0.92[EUR][1000 genomes]
rs10829270	0.93[EUR][1000 genomes]
rs10829272	0.93[EUR][1000 genomes]
rs10829273	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10829274	0.93[EUR][1000 genomes]
rs10829275	0.93[EUR][1000 genomes]
rs11015813	0.92[ASN][1000 genomes]
rs11015814	0.91[ASN][1000 genomes]
rs11015869	0.89[EUR][1000 genomes]
rs1157735	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11597728	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.93[MEX][hapmap];1.00[TSI][hapmap];0.92[EUR][1000 genomes]
rs11598268	0.92[EUR][1000 genomes]
rs11812227	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11818763	0.92[EUR][1000 genomes]
rs12220158	0.88[ASN][1000 genomes]
rs1748482	0.89[EUR][1000 genomes]
rs2477329	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2477334	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2477337	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2477338	0.90[ASN][1000 genomes]
rs2505300	0.95[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.87[ASN][1000 genomes]
rs2505331	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34636144	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34696735	0.83[EUR][1000 genomes]
rs34767495	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56851979	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs584807	0.89[EUR][1000 genomes]
rs587093	0.89[EUR][1000 genomes]
rs590990	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs592818	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs594953	0.87[EUR][1000 genomes]
rs599641	0.89[EUR][1000 genomes]
rs61285402	0.91[ASN][1000 genomes]
rs625446	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs627663	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs660053	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66732057	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs671279	0.87[EUR][1000 genomes]
rs683321	0.86[EUR][1000 genomes]
rs7071295	0.89[EUR][1000 genomes]
rs7074813	0.93[EUR][1000 genomes]
rs7079708	0.91[EUR][1000 genomes]
rs7090506	0.93[EUR][1000 genomes]
rs7096275	0.93[EUR][1000 genomes]
rs71487892	0.89[EUR][1000 genomes]
rs72812124	0.93[EUR][1000 genomes]
rs7899596	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv8614	chr10:27504487-27828406	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
4	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2750890	chr10:27669479-27774501	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27770200-27775600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:27771600-27779800	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr10:27772600-27777600	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:27772800-27775400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr10:27773000-27775000	Weak transcription	Esophagus	oesophagus
6	chr10:27773000-27775400	Enhancers	NHEK	skin
7	chr10:27773000-27775600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr10:27773600-27775200	Enhancers	Stomach Smooth Muscle	stomach
9	chr10:27773800-27778800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr10:27774000-27775200	Enhancers	Colon Smooth Muscle	Colon
11	chr10:27774000-27775400	Enhancers	Rectal Smooth Muscle	rectum
12	chr10:27774400-27775400	Enhancers	HMEC	breast

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