Variant report

Variant	rs1908277
Chromosome Location	chr10:27853959-27853960
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1075064	0.85[ASN][1000 genomes]
rs10764713	0.87[ASN][1000 genomes]
rs11015874	0.93[AFR][1000 genomes];0.97[EUR][1000 genomes]
rs11015877	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11015880	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11015881	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11015882	0.87[AFR][1000 genomes]
rs1603019	0.81[ASN][1000 genomes]
rs4293034	0.85[ASN][1000 genomes]
rs4293035	0.85[ASN][1000 genomes]
rs4440934	0.87[ASN][1000 genomes]
rs903281	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv550241	chr10:27569521-28025771	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv1045257	chr10:27572440-27926946	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv1053952	chr10:27659365-27915029	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:27852800-27854000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr10:27852800-27854200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr10:27853000-27854000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:27853000-27854400	Enhancers	Primary T helper naive cells from peripheral blood	blood
5	chr10:27853000-27857200	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr10:27853000-27867400	Weak transcription	Aorta	Aorta
7	chr10:27853200-27854000	Enhancers	Dnd41	blood
8	chr10:27853200-27854200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:27853200-27854400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr10:27853200-27854600	Enhancers	Fetal Heart	heart
11	chr10:27853400-27854000	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr10:27853400-27857000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr10:27853600-27854200	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr10:27853800-27854200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
15	chr10:27853800-27858400	Weak transcription	Primary B cells from cord blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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