Variant report

Variant	rs10751962
Chromosome Location	chr10:4172711-4172712
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4164939..4167456-chr10:4170244..4172717,2	MCF-7	breast:
2	chr10:4170399..4173353-chr10:4195678..4198644,2	K562	blood:
3	chr10:4101159..4103691-chr10:4170864..4173275,2	MCF-7	breast:
4	chr10:3827534..3829286-chr10:4172120..4173887,2	MCF-7	breast:
5	chr10:3817511..3819980-chr10:4171499..4173614,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10795138	0.83[EUR][1000 genomes]
rs17258608	0.91[JPT][hapmap];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7079146	0.91[JPT][hapmap]
rs72776538	0.83[EUR][1000 genomes]
rs9732075	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	esv3407901	chr10:4172452-4176750	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4163000-4173400	Weak transcription	NHLF	lung
2	chr10:4167200-4174200	Weak transcription	Pancreas	Pancrea
3	chr10:4169400-4173400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr10:4169400-4175200	Enhancers	Primary B cells from peripheral blood	blood
5	chr10:4169600-4172800	Enhancers	Primary B cells from cord blood	blood
6	chr10:4169600-4172800	Enhancers	HUVEC	blood vessel
7	chr10:4169600-4173200	Enhancers	Primary hematopoietic stem cells	blood
8	chr10:4169600-4173200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr10:4170600-4172800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:4170800-4172800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr10:4170800-4172800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr10:4170800-4172800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr10:4170800-4173000	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:4170800-4173200	Weak transcription	Rectal Mucosa Donor 29	rectum
15	chr10:4170800-4174400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:4171000-4172800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr10:4171000-4172800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
18	chr10:4171000-4172800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:4171000-4173000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr10:4171000-4173800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:4171400-4173200	Enhancers	Right Atrium	heart
22	chr10:4171400-4173800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
23	chr10:4171400-4174800	Enhancers	Hela-S3	cervix
24	chr10:4171600-4172800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr10:4171600-4173400	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr10:4171800-4172800	Enhancers	Dnd41	blood
27	chr10:4171800-4173200	Enhancers	Sigmoid Colon	Sigmoid Colon
28	chr10:4171800-4173200	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr10:4171800-4173400	Enhancers	Muscle Satellite Cultured Cells	--
30	chr10:4171800-4174800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr10:4172000-4173600	Enhancers	Stomach Mucosa	stomach
32	chr10:4172000-4173600	Enhancers	NH-A	brain
33	chr10:4172000-4175000	Enhancers	Osteobl	bone
34	chr10:4172200-4172800	Enhancers	Placenta	Placenta
35	chr10:4172200-4173600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr10:4172200-4173600	Enhancers	Fetal Muscle Leg	muscle
37	chr10:4172200-4175200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:4172200-4175200	Enhancers	Fetal Thymus	thymus
39	chr10:4172400-4172800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr10:4172400-4172800	Enhancers	Left Ventricle	heart
41	chr10:4172400-4172800	Weak transcription	Small Intestine	intestine
42	chr10:4172400-4173000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr10:4172400-4173000	Enhancers	Gastric	stomach
44	chr10:4172400-4173200	Enhancers	Psoas Muscle	Psoas
45	chr10:4172400-4173200	Enhancers	Spleen	Spleen
46	chr10:4172400-4173200	Enhancers	GM12878-XiMat	blood
47	chr10:4172400-4173400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr10:4172400-4174200	Enhancers	Adipose Nuclei	Adipose
49	chr10:4172400-4174400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr10:4172600-4172800	Enhancers	Primary T helper cells PMA-I stimulated	--

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