Variant report

Variant	rs72776538
Chromosome Location	chr10:4171198-4171199
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4170365..4172316-chr10:4322695..4325438,2	MCF-7	breast:
2	chr10:3825405..3829399-chr10:4168357..4172262,5	MCF-7	breast:
3	chr10:4164939..4167456-chr10:4170244..4172717,2	MCF-7	breast:
4	chr10:4170399..4173353-chr10:4195678..4198644,2	K562	blood:
5	chr10:4101159..4103691-chr10:4170864..4173275,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10751962	0.83[EUR][1000 genomes]
rs10795127	0.83[ASN][1000 genomes]
rs10795138	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904181	0.83[ASN][1000 genomes]
rs10904188	0.87[ASN][1000 genomes]
rs11252321	0.81[ASN][1000 genomes]
rs11252322	0.81[ASN][1000 genomes]
rs11252324	0.81[ASN][1000 genomes]
rs11252344	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11252345	0.83[ASN][1000 genomes]
rs11252353	0.89[ASN][1000 genomes]
rs11252360	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252361	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252362	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252363	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252364	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13313101	0.83[ASN][1000 genomes]
rs17257066	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17258608	1.00[EUR][1000 genomes]
rs17341886	0.81[ASN][1000 genomes]
rs17342732	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59302676	0.81[ASN][1000 genomes]
rs6601800	0.83[ASN][1000 genomes]
rs6601810	0.81[ASN][1000 genomes]
rs72774774	0.81[ASN][1000 genomes]
rs72774785	0.81[ASN][1000 genomes]
rs72776505	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72776531	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72776532	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72776537	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9732075	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4163000-4173400	Weak transcription	NHLF	lung
2	chr10:4167200-4174200	Weak transcription	Pancreas	Pancrea
3	chr10:4167800-4171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4169400-4173400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:4169400-4175200	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:4169600-4171200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr10:4169600-4171200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr10:4169600-4172400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:4169600-4172600	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr10:4169600-4172600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr10:4169600-4172800	Enhancers	Primary B cells from cord blood	blood
12	chr10:4169600-4172800	Enhancers	HUVEC	blood vessel
13	chr10:4169600-4173200	Enhancers	Primary hematopoietic stem cells	blood
14	chr10:4169600-4173200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr10:4170000-4171400	Weak transcription	Gastric	stomach
16	chr10:4170200-4172600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr10:4170600-4171800	Weak transcription	Dnd41	blood
18	chr10:4170600-4172200	Weak transcription	Placenta	Placenta
19	chr10:4170600-4172400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr10:4170600-4172600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:4170600-4172600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr10:4170600-4172800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:4170800-4172200	Weak transcription	Fetal Thymus	thymus
24	chr10:4170800-4172200	Weak transcription	Small Intestine	intestine
25	chr10:4170800-4172400	Weak transcription	Psoas Muscle	Psoas
26	chr10:4170800-4172600	Weak transcription	Primary T cells from cord blood	blood
27	chr10:4170800-4172600	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:4170800-4172800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr10:4170800-4172800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr10:4170800-4172800	Weak transcription	Duodenum Mucosa	Duodenum
31	chr10:4170800-4173000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr10:4170800-4173200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr10:4170800-4174400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr10:4171000-4171400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr10:4171000-4171800	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr10:4171000-4171800	Weak transcription	Skeletal Muscle Female	skeletal muscle
37	chr10:4171000-4172000	Weak transcription	Stomach Mucosa	stomach
38	chr10:4171000-4172200	Weak transcription	Primary T cells fromperipheralblood	blood
39	chr10:4171000-4172200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr10:4171000-4172400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
41	chr10:4171000-4172400	Weak transcription	Adipose Nuclei	Adipose
42	chr10:4171000-4172400	Weak transcription	Spleen	Spleen
43	chr10:4171000-4172600	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr10:4171000-4172800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr10:4171000-4172800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr10:4171000-4172800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr10:4171000-4173000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
48	chr10:4171000-4173800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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