Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3826233..3829471-chr10:4161588..4164936,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10795138	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10904181	0.82[AMR][1000 genomes]
rs11252321	0.84[AMR][1000 genomes]
rs11252322	0.84[AMR][1000 genomes]
rs11252344	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11252360	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11252361	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11252362	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11252363	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11252364	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17257066	0.96[AMR][1000 genomes]
rs17258608	0.94[EUR][1000 genomes]
rs17341886	0.84[AMR][1000 genomes]
rs17342732	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1923402	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1923403	0.84[EUR][1000 genomes]
rs6601810	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72774774	0.84[AMR][1000 genomes]
rs72774785	0.84[AMR][1000 genomes]
rs72776505	0.96[AMR][1000 genomes]
rs72776532	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72776537	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72776538	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs9732075	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv947578	chr10:4159090-4162184	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4160600-4162800	Weak transcription	Fetal Heart	heart
2	chr10:4160600-4163400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:4160600-4163600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr10:4161600-4161800	Enhancers	Primary T helper cells PMA-I stimulated	--

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