Variant report

Variant	rs17342732
Chromosome Location	chr10:4146151-4146152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4145306..4147487-chr10:4150216..4152593,2	MCF-7	breast:
2	chr10:3825444..3830395-chr10:4144658..4149398,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10508275	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10795127	1.00[ASN][1000 genomes]
rs10795138	0.83[ASN][1000 genomes]
rs10904181	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904188	0.95[ASN][1000 genomes]
rs11252321	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252322	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252324	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252344	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252345	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11252353	0.93[ASN][1000 genomes]
rs11252360	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11252361	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11252362	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11252363	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11252364	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13313101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17257066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17258608	1.00[CEU][hapmap]
rs17341886	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1923402	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1923403	0.87[EUR][1000 genomes]
rs2067541	0.96[ASN][1000 genomes]
rs59302676	0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6601800	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601810	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72774769	0.90[ASN][1000 genomes]
rs72774770	0.90[ASN][1000 genomes]
rs72774774	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72774785	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72776505	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776531	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72776532	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72776537	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72776538	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9732075	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4132600-4148600	Weak transcription	Gastric	stomach
2	chr10:4144000-4147200	Enhancers	Hela-S3	cervix
3	chr10:4145200-4146200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr10:4145200-4146400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr10:4145600-4146600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr10:4145800-4153400	Weak transcription	Muscle Satellite Cultured Cells	--

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