Variant report

Variant	rs72774785
Chromosome Location	chr10:4125588-4125589
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4124093..4126058-chr10:4126935..4129373,2	K562	blood:

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10508275	0.98[ASN][1000 genomes]
rs10795127	0.98[ASN][1000 genomes]
rs10795138	0.81[ASN][1000 genomes]
rs10904181	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904188	0.93[ASN][1000 genomes]
rs11252321	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252322	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252324	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252344	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252345	0.98[ASN][1000 genomes]
rs11252353	0.91[ASN][1000 genomes]
rs11252361	0.81[ASN][1000 genomes]
rs11252363	0.81[ASN][1000 genomes]
rs11252364	0.81[ASN][1000 genomes]
rs13313101	0.98[ASN][1000 genomes]
rs17257066	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17341886	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17342732	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2067541	0.98[ASN][1000 genomes]
rs4147111	0.81[ASN][1000 genomes]
rs57648045	0.86[AFR][1000 genomes]
rs59302676	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601800	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6601810	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72774769	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72774770	0.92[ASN][1000 genomes]
rs72774774	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776505	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72776531	0.84[AMR][1000 genomes]
rs72776537	0.81[ASN][1000 genomes]
rs72776538	0.81[ASN][1000 genomes]
rs9732075	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4117000-4125600	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr10:4117200-4126200	Weak transcription	Duodenum Mucosa	Duodenum
3	chr10:4118000-4126000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr10:4118000-4126000	Weak transcription	NHEK	skin
5	chr10:4121800-4128200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
6	chr10:4122200-4126400	Enhancers	Placenta Amnion	Placenta Amnion
7	chr10:4122600-4126400	Enhancers	NHDF-Ad	bronchial
8	chr10:4123400-4126800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr10:4123600-4126200	Enhancers	Right Ventricle	heart
10	chr10:4123600-4126400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr10:4123600-4126400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:4123600-4127400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:4123600-4128400	Enhancers	Adipose Nuclei	Adipose
14	chr10:4123600-4128800	Enhancers	Fetal Heart	heart
15	chr10:4123800-4125800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:4123800-4125800	Enhancers	Lung	lung
17	chr10:4123800-4125800	Enhancers	Spleen	Spleen
18	chr10:4123800-4126000	Enhancers	Right Atrium	heart
19	chr10:4123800-4126200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr10:4123800-4126200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr10:4123800-4126200	Enhancers	Aorta	Aorta
22	chr10:4123800-4126200	Enhancers	Left Ventricle	heart
23	chr10:4123800-4126200	Enhancers	Ovary	ovary
24	chr10:4123800-4126200	Enhancers	NHLF	lung
25	chr10:4123800-4126200	Enhancers	Osteobl	bone
26	chr10:4123800-4126400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr10:4123800-4126400	Enhancers	Fetal Lung	lung
28	chr10:4124000-4125800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr10:4124200-4125600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr10:4124200-4128200	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr10:4124600-4125800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr10:4124600-4126200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr10:4124600-4126200	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr10:4124800-4125600	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr10:4124800-4126200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:4124800-4126200	Enhancers	Colon Smooth Muscle	Colon
37	chr10:4124800-4127000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
38	chr10:4125000-4126200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr10:4125000-4126200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr10:4125000-4126200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr10:4125000-4126400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr10:4125200-4125600	Enhancers	Fetal Brain Male	brain
43	chr10:4125200-4125600	Enhancers	Stomach Smooth Muscle	stomach
44	chr10:4125200-4125800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr10:4125200-4125800	Enhancers	Small Intestine	intestine
46	chr10:4125200-4125800	Enhancers	HSMMtube	muscle
47	chr10:4125200-4126000	Enhancers	Placenta	Placenta
48	chr10:4125200-4126200	Enhancers	Duodenum Smooth Muscle	Duodenum
49	chr10:4125200-4126200	Enhancers	Fetal Muscle Leg	muscle
50	chr10:4125200-4126400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links