Variant report

Variant	rs4147111
Chromosome Location	chr10:4097118-4097119
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4087454..4089060-chr10:4095096..4097134,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10508275	0.81[CHD][hapmap];0.81[GIH][hapmap];0.92[MKK][hapmap];0.83[ASN][1000 genomes]
rs11252321	0.81[ASN][1000 genomes]
rs11252322	0.81[ASN][1000 genomes]
rs11252324	0.81[ASN][1000 genomes]
rs11252345	0.81[CHD][hapmap]
rs17341886	0.81[ASN][1000 genomes]
rs2067541	0.83[ASN][1000 genomes]
rs59302676	0.81[ASN][1000 genomes]
rs7092668	1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[ASN][1000 genomes]
rs72774769	0.88[ASN][1000 genomes]
rs72774770	0.88[ASN][1000 genomes]
rs72774774	0.81[ASN][1000 genomes]
rs72774785	0.81[ASN][1000 genomes]
rs9732075	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4094200-4103400	Weak transcription	Stomach Mucosa	stomach
2	chr10:4094400-4099200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:4094400-4099400	Weak transcription	Pancreas	Pancrea
4	chr10:4094400-4100400	Weak transcription	Osteobl	bone
5	chr10:4094400-4100600	Weak transcription	Aorta	Aorta
6	chr10:4094400-4100600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr10:4094400-4100800	Weak transcription	Fetal Lung	lung
8	chr10:4094400-4102000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:4094400-4103600	Weak transcription	Gastric	stomach
10	chr10:4094400-4109800	Weak transcription	Right Ventricle	heart
11	chr10:4094600-4099200	Weak transcription	Ovary	ovary
12	chr10:4094600-4099200	Weak transcription	Right Atrium	heart
13	chr10:4094600-4099200	Weak transcription	Spleen	Spleen
14	chr10:4094600-4099400	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:4094600-4100000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr10:4095200-4100600	Weak transcription	Adipose Nuclei	Adipose
17	chr10:4095600-4097200	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:4096200-4097400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr10:4096800-4099600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr10:4096800-4100800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:4097000-4097200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr10:4097000-4097200	Enhancers	Lung	lung
23	chr10:4097000-4100600	Weak transcription	Colon Smooth Muscle	Colon
24	chr10:4097000-4100600	Weak transcription	Rectal Smooth Muscle	rectum
25	chr10:4097000-4100800	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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