Variant report

Variant	rs72774770
Chromosome Location	chr10:4111128-4111129
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4104934..4107897-chr10:4109686..4112440,3	K562	blood:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10508275	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10795127	0.90[ASN][1000 genomes]
rs10904181	0.90[ASN][1000 genomes]
rs10904188	0.86[ASN][1000 genomes]
rs11252321	0.92[ASN][1000 genomes]
rs11252322	0.92[ASN][1000 genomes]
rs11252324	0.92[ASN][1000 genomes]
rs11252344	0.90[ASN][1000 genomes]
rs11252345	0.90[ASN][1000 genomes]
rs11252353	0.84[ASN][1000 genomes]
rs13313101	0.90[ASN][1000 genomes]
rs17257066	0.90[ASN][1000 genomes]
rs17341886	0.92[ASN][1000 genomes]
rs17342732	0.90[ASN][1000 genomes]
rs2067541	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4147111	0.88[ASN][1000 genomes]
rs59302676	0.92[ASN][1000 genomes]
rs6601800	0.90[ASN][1000 genomes]
rs6601810	0.88[ASN][1000 genomes]
rs7092668	0.84[ASN][1000 genomes]
rs72774769	1.00[ASN][1000 genomes]
rs72774774	0.92[ASN][1000 genomes]
rs72774785	0.92[ASN][1000 genomes]
rs72776505	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:62 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4104200-4111800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:4104400-4117200	Weak transcription	Small Intestine	intestine
3	chr10:4104600-4111600	Weak transcription	Primary T cells from cord blood	blood
4	chr10:4104800-4111400	Weak transcription	HSMMtube	muscle
5	chr10:4105000-4111600	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr10:4105800-4111400	Weak transcription	Esophagus	oesophagus
7	chr10:4107800-4113000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:4108000-4115000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:4108600-4112200	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr10:4108600-4112200	Enhancers	Rectal Mucosa Donor 29	rectum
11	chr10:4109000-4111200	Enhancers	Fetal Brain Male	brain
12	chr10:4109000-4112000	Enhancers	Sigmoid Colon	Sigmoid Colon
13	chr10:4109000-4112200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr10:4109000-4112200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr10:4109000-4112400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr10:4109200-4111200	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr10:4109200-4111400	Weak transcription	Left Ventricle	heart
18	chr10:4109200-4112000	Enhancers	Placenta	Placenta
19	chr10:4109200-4112000	Enhancers	Spleen	Spleen
20	chr10:4109200-4112400	Enhancers	Muscle Satellite Cultured Cells	--
21	chr10:4109200-4112400	Enhancers	NHDF-Ad	bronchial
22	chr10:4109200-4112800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:4109200-4112800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr10:4109200-4112800	Enhancers	Osteobl	bone
25	chr10:4109200-4113000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr10:4109200-4113000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr10:4109400-4112600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr10:4109400-4113000	Enhancers	HUVEC	blood vessel
29	chr10:4109400-4113400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr10:4109800-4112200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr10:4109800-4113400	Enhancers	HMEC	breast
32	chr10:4109800-4116200	Weak transcription	Primary T helper cells fromperipheralblood	blood
33	chr10:4110000-4111600	Weak transcription	Primary T cells fromperipheralblood	blood
34	chr10:4110000-4111600	Weak transcription	Fetal Muscle Leg	muscle
35	chr10:4110000-4111600	Weak transcription	Fetal Thymus	thymus
36	chr10:4110000-4111800	Enhancers	Colonic Mucosa	Colon
37	chr10:4110000-4113000	Weak transcription	Fetal Muscle Trunk	muscle
38	chr10:4110200-4111400	Weak transcription	Fetal Heart	heart
39	chr10:4110200-4111600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
40	chr10:4110200-4111600	Weak transcription	Adipose Nuclei	Adipose
41	chr10:4110200-4111600	Weak transcription	Fetal Intestine Large	intestine
42	chr10:4110200-4111600	Weak transcription	Fetal Lung	lung
43	chr10:4110200-4111600	Weak transcription	NH-A	brain
44	chr10:4110200-4111800	Weak transcription	Fetal Intestine Small	intestine
45	chr10:4110200-4113200	Enhancers	NHEK	skin
46	chr10:4110200-4113400	Weak transcription	Primary B cells from cord blood	blood
47	chr10:4110200-4115400	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr10:4110200-4116000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr10:4110400-4111400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr10:4110400-4111400	Weak transcription	NHLF	lung

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