Variant report

Variant	rs6601810
Chromosome Location	chr10:4140086-4140087
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10508275	0.86[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10795127	0.98[ASN][1000 genomes]
rs10795138	0.81[ASN][1000 genomes]
rs10904181	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904188	0.93[ASN][1000 genomes]
rs11252321	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252322	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252324	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252344	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11252353	0.91[ASN][1000 genomes]
rs11252360	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11252361	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11252362	0.83[EUR][1000 genomes]
rs11252363	0.86[CEU][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11252364	0.86[CEU][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13313101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17257066	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17258608	0.86[CEU][hapmap];0.89[TSI][hapmap]
rs17341886	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17342732	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1923402	0.87[EUR][1000 genomes]
rs1923403	0.87[EUR][1000 genomes]
rs2067541	0.93[ASN][1000 genomes]
rs59302676	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6601800	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72774769	0.88[ASN][1000 genomes]
rs72774770	0.88[ASN][1000 genomes]
rs72774774	0.86[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72774785	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72776505	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72776531	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72776532	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72776537	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72776538	0.81[ASN][1000 genomes]
rs9732075	0.86[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4132600-4148600	Weak transcription	Gastric	stomach

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