Variant report

Variant	rs10795127
Chromosome Location	chr10:4149673-4149674
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10508275	1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10736986	0.84[AFR][1000 genomes]
rs10751958	0.86[AFR][1000 genomes]
rs10795128	0.83[AFR][1000 genomes]
rs10795129	0.84[AFR][1000 genomes]
rs10795130	0.98[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10795138	0.83[ASN][1000 genomes]
rs10904181	1.00[ASN][1000 genomes]
rs10904188	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10904194	0.84[EUR][1000 genomes]
rs11252321	0.98[ASN][1000 genomes]
rs11252322	0.98[ASN][1000 genomes]
rs11252324	0.98[ASN][1000 genomes]
rs11252344	1.00[ASN][1000 genomes]
rs11252345	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252353	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252361	0.83[ASN][1000 genomes]
rs11252363	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11252364	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs13313101	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17257066	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17341886	0.98[ASN][1000 genomes]
rs17342732	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs2067541	0.96[ASN][1000 genomes]
rs59302676	0.98[ASN][1000 genomes]
rs6601800	1.00[ASN][1000 genomes]
rs6601810	0.98[ASN][1000 genomes]
rs7079146	0.90[CEU][hapmap];0.92[YRI][hapmap];0.99[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72774769	0.90[ASN][1000 genomes]
rs72774770	0.90[ASN][1000 genomes]
rs72774774	0.98[ASN][1000 genomes]
rs72774785	0.98[ASN][1000 genomes]
rs72776505	1.00[ASN][1000 genomes]
rs72776537	0.83[ASN][1000 genomes]
rs72776538	0.83[ASN][1000 genomes]
rs7897482	0.85[AFR][1000 genomes]
rs9732075	0.82[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4145800-4153400	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr10:4146400-4152400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr10:4146600-4153400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr10:4147200-4152800	Weak transcription	Hela-S3	cervix
5	chr10:4149400-4150400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr10:4149400-4151600	Enhancers	Adipose Nuclei	Adipose
7	chr10:4149600-4150400	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links