Variant report

Variant	rs17341886
Chromosome Location	chr10:4128511-4128512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4124093..4126058-chr10:4126935..4129373,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10508275	0.87[CEU][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10795127	0.98[ASN][1000 genomes]
rs10795138	0.81[ASN][1000 genomes]
rs10904181	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904188	0.93[ASN][1000 genomes]
rs11252321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252322	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252324	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252344	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252345	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs11252353	0.91[ASN][1000 genomes]
rs11252361	0.81[ASN][1000 genomes]
rs11252363	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs11252364	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs12243807	0.87[CEU][hapmap]
rs13313101	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17257066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17258608	1.00[CEU][hapmap]
rs17342732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2067541	0.98[ASN][1000 genomes]
rs4147111	0.81[ASN][1000 genomes]
rs59302676	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6601800	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6601810	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72774769	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs72774770	0.92[ASN][1000 genomes]
rs72774774	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72774785	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776505	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72776531	0.84[AMR][1000 genomes]
rs72776537	0.81[ASN][1000 genomes]
rs72776538	0.81[ASN][1000 genomes]
rs9732075	1.00[CEU][hapmap];0.86[JPT][hapmap];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4123600-4128800	Enhancers	Fetal Heart	heart
2	chr10:4125800-4128600	Weak transcription	Fetal Intestine Small	intestine
3	chr10:4126000-4128600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:4126000-4128600	Weak transcription	Right Atrium	heart
5	chr10:4126200-4128600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr10:4126200-4128600	Weak transcription	Brain Cingulate Gyrus	brain
7	chr10:4126200-4128800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr10:4126400-4128600	Weak transcription	Stomach Smooth Muscle	stomach
9	chr10:4126400-4128800	Weak transcription	Fetal Kidney	kidney
10	chr10:4127200-4128600	Enhancers	Left Ventricle	heart
11	chr10:4127200-4129000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr10:4127800-4129200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr10:4128000-4129200	Enhancers	Fetal Brain Male	brain
14	chr10:4128200-4128600	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr10:4128200-4128600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr10:4128200-4128600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr10:4128200-4128600	Enhancers	Psoas Muscle	Psoas
18	chr10:4128200-4128800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:4128200-4128800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:4128200-4128800	Enhancers	Fetal Brain Female	brain
21	chr10:4128200-4128800	Enhancers	Osteobl	bone
22	chr10:4128200-4129000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr10:4128200-4129000	Enhancers	Brain Germinal Matrix	brain
24	chr10:4128200-4129000	Enhancers	Fetal Muscle Leg	muscle
25	chr10:4128200-4129200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr10:4128200-4129200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr10:4128400-4128600	Active TSS	Brain Anterior Caudate	brain
28	chr10:4128400-4128600	Enhancers	Fetal Lung	lung
29	chr10:4128400-4128800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr10:4128400-4128800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
31	chr10:4128400-4128800	Enhancers	Colon Smooth Muscle	Colon
32	chr10:4128400-4128800	Weak transcription	Ovary	ovary
33	chr10:4128400-4128800	Enhancers	HUVEC	blood vessel
34	chr10:4128400-4129000	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr10:4128400-4129000	Active TSS	Aorta	Aorta
36	chr10:4128400-4129200	Flanking Active TSS	Right Ventricle	heart
37	chr10:4128400-4129600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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