Variant report

Variant	rs6601800
Chromosome Location	chr10:4130066-4130067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4089131..4091223-chr10:4129721..4132308,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AKR1E2-5	chr10:4129551-4131205	XLOC_008358

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10508275	0.85[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs10795127	1.00[ASN][1000 genomes]
rs10795138	0.83[ASN][1000 genomes]
rs10904181	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904188	0.95[ASN][1000 genomes]
rs11252321	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252322	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252324	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11252344	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252345	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs11252353	0.93[ASN][1000 genomes]
rs11252361	0.83[ASN][1000 genomes]
rs11252363	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11252364	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs12243807	0.82[CEU][hapmap]
rs13313101	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17257066	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17258608	1.00[CEU][hapmap]
rs17341886	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17342732	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2067541	0.96[ASN][1000 genomes]
rs59302676	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6601810	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7092668	0.81[CHD][hapmap]
rs72774769	0.90[ASN][1000 genomes]
rs72774770	0.90[ASN][1000 genomes]
rs72774774	0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72774785	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72776505	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776537	0.83[ASN][1000 genomes]
rs72776538	0.83[ASN][1000 genomes]
rs7897041	0.82[CEU][hapmap]
rs7912112	0.82[CEU][hapmap]
rs9732075	1.00[CEU][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1046213	chr10:4059937-4144692	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv540460	chr10:4059937-4144692	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4129000-4135600	Weak transcription	Ovary	ovary
2	chr10:4129400-4135600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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