Variant report

Variant	rs9732075
Chromosome Location	chr10:4170794-4170795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:4170365..4172316-chr10:4322695..4325438,2	MCF-7	breast:
2	chr10:3825405..3829399-chr10:4168357..4172262,5	MCF-7	breast:
3	chr10:4164939..4167456-chr10:4170244..4172717,2	MCF-7	breast:
4	chr10:4170399..4173353-chr10:4195678..4198644,2	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508275	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs10751956	1.00[YRI][hapmap]
rs10751962	0.83[EUR][1000 genomes]
rs10795127	0.83[ASN][1000 genomes]
rs10795138	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904181	0.83[ASN][1000 genomes]
rs10904188	0.87[ASN][1000 genomes]
rs11252321	0.81[ASN][1000 genomes]
rs11252322	0.81[ASN][1000 genomes]
rs11252324	0.81[ASN][1000 genomes]
rs11252344	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs11252345	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11252353	0.89[ASN][1000 genomes]
rs11252360	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252361	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252363	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252364	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243807	0.87[CEU][hapmap]
rs13313101	0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs17257066	1.00[CEU][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17258608	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17341886	0.81[ASN][1000 genomes]
rs17342732	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs59302676	0.81[ASN][1000 genomes]
rs6601800	0.83[ASN][1000 genomes]
rs6601810	0.81[ASN][1000 genomes]
rs72774774	0.81[ASN][1000 genomes]
rs72774785	0.81[ASN][1000 genomes]
rs72776505	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72776531	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72776532	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72776537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776538	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74114621	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4163000-4173400	Weak transcription	NHLF	lung
2	chr10:4167200-4174200	Weak transcription	Pancreas	Pancrea
3	chr10:4167800-4171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr10:4169400-4173400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr10:4169400-4175200	Enhancers	Primary B cells from peripheral blood	blood
6	chr10:4169600-4170800	Enhancers	Primary T helper cells PMA-I stimulated	--
7	chr10:4169600-4170800	Enhancers	Duodenum Mucosa	Duodenum
8	chr10:4169600-4171000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr10:4169600-4171000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
10	chr10:4169600-4171000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr10:4169600-4171000	Enhancers	Adipose Nuclei	Adipose
12	chr10:4169600-4171000	Enhancers	Stomach Mucosa	stomach
13	chr10:4169600-4171200	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr10:4169600-4171200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr10:4169600-4172400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr10:4169600-4172600	Enhancers	Primary neutrophils fromperipheralblood	blood
17	chr10:4169600-4172600	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:4169600-4172800	Enhancers	Primary B cells from cord blood	blood
19	chr10:4169600-4172800	Enhancers	HUVEC	blood vessel
20	chr10:4169600-4173200	Enhancers	Primary hematopoietic stem cells	blood
21	chr10:4169600-4173200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr10:4169800-4170800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr10:4169800-4170800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr10:4169800-4170800	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr10:4169800-4170800	Enhancers	Primary T cells from cord blood	blood
26	chr10:4169800-4170800	Enhancers	Brain Germinal Matrix	brain
27	chr10:4169800-4170800	Enhancers	Duodenum Smooth Muscle	Duodenum
28	chr10:4169800-4170800	Enhancers	Fetal Thymus	thymus
29	chr10:4169800-4170800	Enhancers	Rectal Mucosa Donor 29	rectum
30	chr10:4169800-4170800	Enhancers	Small Intestine	intestine
31	chr10:4169800-4171000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr10:4169800-4171000	Enhancers	Sigmoid Colon	Sigmoid Colon
33	chr10:4169800-4171000	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:4169800-4171000	Enhancers	Spleen	Spleen
35	chr10:4169800-4171000	Enhancers	HepG2	liver
36	chr10:4170000-4170800	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr10:4170000-4170800	Weak transcription	Skeletal Muscle Female	skeletal muscle
38	chr10:4170000-4171000	Enhancers	Primary T killer memory cells from peripheral blood	blood
39	chr10:4170000-4171000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr10:4170000-4171000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
41	chr10:4170000-4171400	Weak transcription	Gastric	stomach
42	chr10:4170200-4170800	Enhancers	HUES6 Cell Line	embryonic stem cell
43	chr10:4170200-4170800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:4170200-4170800	Enhancers	Cortex derived primary cultured neurospheres	brain
45	chr10:4170200-4172600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr10:4170400-4171000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
47	chr10:4170400-4171000	Flanking Active TSS	GM12878-XiMat	blood
48	chr10:4170600-4170800	Enhancers	Psoas Muscle	Psoas
49	chr10:4170600-4171000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr10:4170600-4171800	Weak transcription	Dnd41	blood

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