Variant report

Variant	rs11252353
Chromosome Location	chr10:4156176-4156177
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10508275	0.89[ASN][1000 genomes]
rs10736986	0.86[AFR][1000 genomes]
rs10751958	0.83[AFR][1000 genomes]
rs10795127	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10795128	0.83[AFR][1000 genomes]
rs10795129	0.84[AFR][1000 genomes]
rs10795130	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10795138	0.89[ASN][1000 genomes]
rs10904181	0.93[ASN][1000 genomes]
rs10904188	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10904194	0.84[EUR][1000 genomes]
rs11252321	0.91[ASN][1000 genomes]
rs11252322	0.91[ASN][1000 genomes]
rs11252324	0.91[ASN][1000 genomes]
rs11252344	0.93[ASN][1000 genomes]
rs11252345	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11252361	0.89[ASN][1000 genomes]
rs11252362	0.85[ASN][1000 genomes]
rs11252363	0.89[ASN][1000 genomes]
rs11252364	0.89[ASN][1000 genomes]
rs13313101	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17257066	0.93[ASN][1000 genomes]
rs17341886	0.91[ASN][1000 genomes]
rs17342732	0.93[ASN][1000 genomes]
rs17349974	1.00[JPT][hapmap]
rs2067541	0.89[ASN][1000 genomes]
rs59302676	0.91[ASN][1000 genomes]
rs6601800	0.93[ASN][1000 genomes]
rs6601810	0.91[ASN][1000 genomes]
rs7079146	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72774769	0.84[ASN][1000 genomes]
rs72774770	0.84[ASN][1000 genomes]
rs72774774	0.91[ASN][1000 genomes]
rs72774785	0.91[ASN][1000 genomes]
rs72776505	0.93[ASN][1000 genomes]
rs72776537	0.89[ASN][1000 genomes]
rs72776538	0.89[ASN][1000 genomes]
rs7897482	0.82[AFR][1000 genomes]
rs9732075	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4154800-4157600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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