Variant report

Variant	rs11252363
Chromosome Location	chr10:4168497-4168498
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3825405..3829399-chr10:4168357..4172262,5	MCF-7	breast:
2	chr10:3827509..3829615-chr10:4165974..4168718,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10508275	0.87[CEU][hapmap];1.00[JPT][hapmap]
rs10795127	0.83[ASN][1000 genomes]
rs10795138	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10904181	0.83[ASN][1000 genomes]
rs10904188	0.87[ASN][1000 genomes]
rs11252321	0.81[ASN][1000 genomes]
rs11252322	0.81[ASN][1000 genomes]
rs11252324	0.81[ASN][1000 genomes]
rs11252344	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11252345	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs11252353	0.89[ASN][1000 genomes]
rs11252360	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252361	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11252362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11252364	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12243807	0.85[CEU][hapmap]
rs13313101	1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs17257066	1.00[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17258608	1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes]
rs17341886	0.81[ASN][1000 genomes]
rs17342732	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1923402	0.82[EUR][1000 genomes]
rs1923403	0.82[EUR][1000 genomes]
rs59302676	0.81[ASN][1000 genomes]
rs6601800	0.83[ASN][1000 genomes]
rs6601810	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs72774774	0.81[ASN][1000 genomes]
rs72774785	0.81[ASN][1000 genomes]
rs72776505	0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs72776531	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72776532	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72776537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776538	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74114621	0.87[AFR][1000 genomes]
rs9732075	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4163000-4173400	Weak transcription	NHLF	lung
2	chr10:4164000-4170000	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:4164400-4169600	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr10:4164600-4169600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr10:4167200-4174200	Weak transcription	Pancreas	Pancrea
6	chr10:4167400-4169400	Weak transcription	Primary B cells from peripheral blood	blood
7	chr10:4167800-4171800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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