Variant report

Variant	rs1923403
Chromosome Location	chr10:4160744-4160745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 61 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10736986	0.91[ASN][1000 genomes]
rs10751958	0.89[ASN][1000 genomes]
rs10751959	0.93[ASN][1000 genomes]
rs10795123	0.87[ASN][1000 genomes]
rs10795128	0.91[ASN][1000 genomes]
rs10795129	0.91[ASN][1000 genomes]
rs10795131	0.91[ASN][1000 genomes]
rs10904179	0.87[ASN][1000 genomes]
rs10904183	0.85[ASN][1000 genomes]
rs10904184	0.85[ASN][1000 genomes]
rs10904185	0.89[ASN][1000 genomes]
rs10904186	0.88[ASN][1000 genomes]
rs10904187	0.89[ASN][1000 genomes]
rs10904194	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10904197	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11252329	0.88[ASN][1000 genomes]
rs11252331	0.88[ASN][1000 genomes]
rs11252338	0.85[ASN][1000 genomes]
rs11252344	0.87[EUR][1000 genomes]
rs11252360	0.82[EUR][1000 genomes]
rs11252361	0.82[EUR][1000 genomes]
rs11252362	0.82[EUR][1000 genomes]
rs11252363	0.82[EUR][1000 genomes]
rs11252364	0.82[EUR][1000 genomes]
rs11597117	0.89[ASN][1000 genomes]
rs12412777	0.85[JPT][hapmap]
rs17258608	0.82[AMR][1000 genomes]
rs17342732	0.87[EUR][1000 genomes]
rs1923402	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs2397408	0.90[ASN][1000 genomes]
rs2894884	0.89[ASN][1000 genomes]
rs4268419	0.89[ASN][1000 genomes]
rs4297363	0.87[ASN][1000 genomes]
rs4298799	0.87[ASN][1000 genomes]
rs4880663	0.87[ASN][1000 genomes]
rs4881282	0.87[ASN][1000 genomes]
rs4881284	0.89[ASN][1000 genomes]
rs4881285	0.88[ASN][1000 genomes]
rs4881286	0.88[ASN][1000 genomes]
rs4881287	0.87[ASN][1000 genomes]
rs6601804	0.87[ASN][1000 genomes]
rs6601805	0.87[ASN][1000 genomes]
rs6601809	0.87[ASN][1000 genomes]
rs6601810	0.87[EUR][1000 genomes]
rs7070987	0.87[ASN][1000 genomes]
rs7073670	0.85[ASN][1000 genomes]
rs7073684	0.85[ASN][1000 genomes]
rs7073835	0.87[ASN][1000 genomes]
rs7074508	0.89[ASN][1000 genomes]
rs7078368	0.87[ASN][1000 genomes]
rs7089374	0.87[ASN][1000 genomes]
rs7090083	0.85[ASN][1000 genomes]
rs7090084	0.85[ASN][1000 genomes]
rs7090107	0.85[ASN][1000 genomes]
rs72776531	0.84[EUR][1000 genomes]
rs72776532	0.84[EUR][1000 genomes]
rs72776537	0.82[EUR][1000 genomes]
rs7897482	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv947578	chr10:4159090-4162184	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4160600-4162800	Weak transcription	Fetal Heart	heart
2	chr10:4160600-4163400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr10:4160600-4163600	Weak transcription	Duodenum Mucosa	Duodenum

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