Variant report

Variant	rs11252360
Chromosome Location	chr10:4163983-4163984
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:3826233..3829471-chr10:4161588..4164936,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10795138	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252344	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11252361	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252362	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11252363	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11252364	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17257066	0.92[AMR][1000 genomes]
rs17258608	0.96[EUR][1000 genomes]
rs17342732	0.96[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1923402	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1923403	0.82[EUR][1000 genomes]
rs6601810	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72776505	0.92[AMR][1000 genomes]
rs72776531	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72776532	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72776537	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72776538	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9732075	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
2	nsv831772	chr10:4039292-4212218	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4162600-4164200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr10:4162800-4164000	Enhancers	Fetal Muscle Trunk	muscle
3	chr10:4162800-4164000	Enhancers	Right Ventricle	heart
4	chr10:4162800-4164000	Enhancers	Stomach Smooth Muscle	stomach
5	chr10:4162800-4164200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
6	chr10:4162800-4164400	Enhancers	Primary hematopoietic stem cells	blood
7	chr10:4162800-4164400	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr10:4162800-4164600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr10:4162800-4164600	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr10:4162800-4164800	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr10:4162800-4165400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr10:4162800-4165800	Enhancers	Fetal Lung	lung
13	chr10:4163000-4166800	Weak transcription	Pancreas	Pancrea
14	chr10:4163000-4173400	Weak transcription	NHLF	lung
15	chr10:4163400-4164000	Enhancers	Lung	lung
16	chr10:4163400-4164200	Enhancers	Fetal Thymus	thymus
17	chr10:4163400-4164400	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:4163600-4164000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr10:4163600-4164000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr10:4163600-4164000	Enhancers	Colonic Mucosa	Colon
21	chr10:4163600-4164000	Enhancers	Duodenum Mucosa	Duodenum
22	chr10:4163600-4164000	Enhancers	Left Ventricle	heart
23	chr10:4163600-4164000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
24	chr10:4163600-4164200	Flanking Active TSS	Primary B cells from cord blood	blood
25	chr10:4163600-4164200	Flanking Active TSS	Primary B cells from peripheral blood	blood
26	chr10:4163600-4164200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:4163600-4164200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr10:4163600-4164200	Enhancers	Small Intestine	intestine
29	chr10:4163600-4164200	Flanking Active TSS	GM12878-XiMat	blood
30	chr10:4163600-4164400	Enhancers	Primary T cells fromperipheralblood	blood
31	chr10:4163600-4164400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr10:4163600-4164400	Enhancers	Primary T helper cells fromperipheralblood	blood
33	chr10:4163600-4164400	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr10:4163600-4164800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
35	chr10:4163600-4165200	Enhancers	Fetal Muscle Leg	muscle
36	chr10:4163600-4165200	Enhancers	Stomach Mucosa	stomach
37	chr10:4163800-4164000	Flanking Active TSS	Adipose Nuclei	Adipose
38	chr10:4163800-4164000	Flanking Active TSS	Fetal Heart	heart
39	chr10:4163800-4164000	Enhancers	Right Atrium	heart
40	chr10:4163800-4164000	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr10:4163800-4164200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
42	chr10:4163800-4164400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr10:4163800-4164400	Active TSS	Rectal Mucosa Donor 29	rectum
44	chr10:4163800-4164400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
45	chr10:4163800-4164800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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