Variant report

Variant	rs10751983
Chromosome Location	chr10:4775826-4775827
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4727830..4729857-chr10:4775467..4777003,2	MCF-7	breast:
2	chr10:4774392..4777197-chr10:4807926..4810361,3	MCF-7	breast:
3	chr10:4702078..4707095-chr10:4773802..4779822,17	MCF-7	breast:
4	chr10:4702582..4706500-chr10:4772852..4778695,11	MCF-7	breast:
5	chr10:4761428..4765181-chr10:4774344..4777654,4	MCF-7	breast:
6	chr10:4711824..4713897-chr10:4774936..4777024,2	MCF-7	breast:
7	chr10:4769786..4771647-chr10:4773749..4776059,2	K562	blood:
8	chr10:4773770..4776982-chr10:4789881..4792527,4	MCF-7	breast:
9	chr10:4775533..4777498-chr10:4789068..4791596,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10795196	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10904323	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10904328	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17133449	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1901637	0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1901639	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4639834	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7906889	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4774800-4776400	Enhancers	Placenta	Placenta
2	chr10:4774800-4776400	Enhancers	HMEC	breast
3	chr10:4775200-4776000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr10:4775200-4776200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr10:4775200-4776400	Enhancers	Stomach Mucosa	stomach
6	chr10:4775200-4776400	Enhancers	Hela-S3	cervix
7	chr10:4775400-4776200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr10:4775400-4776200	Enhancers	Gastric	stomach
9	chr10:4775400-4776200	Flanking Active TSS	A549	lung
10	chr10:4775400-4776400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:4775400-4776400	Enhancers	HepG2	liver
12	chr10:4775400-4776400	Enhancers	HUVEC	blood vessel
13	chr10:4775600-4776200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:4775800-4776400	Enhancers	Esophagus	oesophagus
15	chr10:4775800-4776400	Enhancers	NHEK	skin
16	chr10:4775800-4776800	Enhancers	Placenta Amnion	Placenta Amnion

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links