Variant report

Variant	rs10795196
Chromosome Location	chr10:4740290-4740291
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10751983	0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10904323	1.00[CHB][hapmap];0.90[JPT][hapmap];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904328	0.82[EUR][1000 genomes]
rs17133449	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1901637	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1901639	0.95[CHB][hapmap];0.85[JPT][hapmap];0.88[ASN][1000 genomes]
rs4639834	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7906889	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4734200-4745800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr10:4734400-4742800	Weak transcription	NHLF	lung
3	chr10:4734400-4743200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr10:4734600-4742800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr10:4734800-4745600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr10:4735000-4746000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr10:4736400-4746400	Weak transcription	Psoas Muscle	Psoas
8	chr10:4736400-4746400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr10:4738400-4755600	Weak transcription	Right Atrium	heart
10	chr10:4739000-4740600	Enhancers	Fetal Muscle Leg	muscle
11	chr10:4739200-4741800	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr10:4740200-4740600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr10:4740200-4740600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr10:4740200-4740600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr10:4740200-4740600	Enhancers	Rectal Smooth Muscle	rectum
16	chr10:4740200-4740600	Enhancers	A549	lung
17	chr10:4740200-4740600	Enhancers	NHEK	skin
18	chr10:4740200-4740800	Enhancers	HMEC	breast
19	chr10:4740200-4741200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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