Variant report

Variant	rs10904323
Chromosome Location	chr10:4748240-4748241
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10751983	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10795196	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10904328	0.89[JPT][hapmap];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17133449	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1901637	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1901639	0.95[CHB][hapmap];0.89[CHD][hapmap];0.88[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs4639834	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7906889	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894787	chr10:4385379-4857717	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1040924	chr10:4734176-4765606	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10904323	IL15RA	cis	parietal	SCAN

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4738400-4755600	Weak transcription	Right Atrium	heart
2	chr10:4742600-4748400	Enhancers	HUVEC	blood vessel
3	chr10:4743400-4758400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr10:4746600-4748400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr10:4746600-4753400	Weak transcription	Gastric	stomach
6	chr10:4746600-4754200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr10:4746800-4762800	Weak transcription	NHLF	lung
8	chr10:4747200-4748600	Weak transcription	A549	lung
9	chr10:4747200-4754000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:4748000-4748600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr10:4748000-4750600	Enhancers	Stomach Mucosa	stomach
12	chr10:4748200-4748400	Enhancers	Breast Myoepithelial Primary Cells	Breast
13	chr10:4748200-4748400	ZNF genes & repeats	Left Ventricle	heart
14	chr10:4748200-4748400	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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