Variant report

Variant	rs10752093
Chromosome Location	chr10:5762405-5762406
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:5757345..5759947-chr10:5761882..5764434,2	K562	blood:
2	chr10:5760893..5762838-chr10:5855669..5858245,2	K562	blood:
3	chr10:5762001..5764340-chr10:5764704..5766280,2	K562	blood:

Variant related genes	Relation type
ENSG00000057608	Chromatin interaction
ENSG00000272764	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs2669136	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4750644	1.00[YRI][hapmap];1.00[AFR][1000 genomes]
rs59474262	1.00[AMR][1000 genomes]
rs7092600	1.00[AMR][1000 genomes]
rs73612486	1.00[AMR][1000 genomes]
rs73614613	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	esv1796213	chr10:5716555-5766165	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
7	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
8	nsv1050663	chr10:5737979-5785918	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv519891	chr10:5753737-5768493	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv525080	chr10:5754611-5766337	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5734800-5763400	Weak transcription	HSMM	muscle
2	chr10:5735200-5767000	Weak transcription	Fetal Muscle Leg	muscle
3	chr10:5738600-5769000	Weak transcription	Left Ventricle	heart
4	chr10:5740400-5768600	Weak transcription	Psoas Muscle	Psoas
5	chr10:5741400-5765600	Weak transcription	A549	lung
6	chr10:5743200-5762600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr10:5750000-5763400	Weak transcription	K562	blood
8	chr10:5751600-5763800	Weak transcription	Osteobl	bone
9	chr10:5752200-5763600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr10:5752600-5767000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr10:5753000-5762600	Weak transcription	Dnd41	blood
12	chr10:5753600-5762800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr10:5753600-5762800	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr10:5753600-5763400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr10:5753600-5764000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr10:5753800-5763000	Weak transcription	Primary monocytes fromperipheralblood	blood
17	chr10:5753800-5763200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr10:5753800-5763600	Weak transcription	Adipose Nuclei	Adipose
19	chr10:5753800-5763600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr10:5753800-5764600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr10:5753800-5765600	Weak transcription	Duodenum Smooth Muscle	Duodenum
22	chr10:5753800-5768600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr10:5753800-5769000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr10:5753800-5769000	Weak transcription	Thymus	Thymus
25	chr10:5753800-5772200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
26	chr10:5753800-5772400	Weak transcription	Brain Anterior Caudate	brain
27	chr10:5753800-5772600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:5753800-5772800	Weak transcription	Brain Hippocampus Middle	brain
29	chr10:5753800-5773200	Weak transcription	NHLF	lung
30	chr10:5753800-5783400	Weak transcription	Brain Substantia Nigra	brain
31	chr10:5753800-5787000	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr10:5754000-5762600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr10:5754000-5762800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr10:5754000-5762800	Weak transcription	HMEC	breast
35	chr10:5754000-5763400	Weak transcription	Primary B cells from cord blood	blood
36	chr10:5754000-5768600	Weak transcription	Cortex derived primary cultured neurospheres	brain
37	chr10:5754000-5772800	Weak transcription	Ovary	ovary
38	chr10:5754000-5773200	Weak transcription	Colon Smooth Muscle	Colon
39	chr10:5754200-5763400	Weak transcription	Primary T cells from cord blood	blood
40	chr10:5754200-5763800	Weak transcription	Liver	Liver
41	chr10:5754200-5773000	Weak transcription	Brain Cingulate Gyrus	brain
42	chr10:5754400-5763400	Weak transcription	HepG2	liver
43	chr10:5754400-5763800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr10:5754400-5781600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
45	chr10:5754600-5765400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
46	chr10:5754600-5767600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr10:5755400-5772600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
48	chr10:5757000-5772800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr10:5757200-5765200	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr10:5757600-5762800	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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