Variant report

Variant	rs7092600
Chromosome Location	chr10:5725405-5725406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr10:5725400-5725550	GM12872	blood:	n/a	n/a

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5487811..5491565-chr10:5724124..5727399,4	K562	blood:
2	chr10:5486978..5493668-chr10:5725151..5730020,10	MCF-7	breast:
3	chr10:5673035..5675364-chr10:5725053..5728516,4	MCF-7	breast:
4	chr10:5487109..5491565-chr10:5723765..5727399,5	K562	blood:
5	chr10:5673292..5677112-chr10:5724421..5727333,4	K562	blood:
6	chr10:5725239..5726746-chr10:5852889..5855526,2	K562	blood:
7	chr10:5725239..5729489-chr10:5854026..5858186,8	K562	blood:
8	chr10:5674655..5677112-chr10:5724421..5726297,2	K562	blood:
9	chr10:5706894..5712025-chr10:5724987..5728504,7	MCF-7	breast:
10	chr10:5724274..5728540-chr10:5734829..5741563,8	MCF-7	breast:
11	chr10:5722939..5725566-chr10:5730999..5734048,3	K562	blood:
12	chr10:5704788..5710194-chr10:5724908..5728833,8	K562	blood:
13	chr10:5725094..5729377-chr10:5927689..5933777,6	MCF-7	breast:

No data

No data

No data

Variant related genes	Relation type
FAM208B	TF binding region
ENSG00000272764	Chromatin interaction
ENSG00000108021	Chromatin interaction
ENSG00000196372	Chromatin interaction
ENSG00000173848	Chromatin interaction
ENSG00000134461	Chromatin interaction
ENSG00000240577	Chromatin interaction
ENSG00000134452	Chromatin interaction
ENSG00000057608	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10752093	1.00[AMR][1000 genomes]
rs2669136	1.00[AMR][1000 genomes]
rs59474262	1.00[AMR][1000 genomes]
rs73612486	1.00[AMR][1000 genomes]
rs73614613	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534685	chr10:4914018-5853324	Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
2	esv2759729	chr10:5557024-5804780	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
3	esv2758209	chr10:5637111-5804780	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv549895	chr10:5712310-5735648	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv1796213	chr10:5716555-5766165	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv522415	chr10:5721653-5768493	Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5720000-5726000	Weak transcription	Thymus	Thymus
2	chr10:5720400-5725800	Weak transcription	Fetal Thymus	thymus
3	chr10:5721800-5726000	Weak transcription	Primary neutrophils fromperipheralblood	blood
4	chr10:5722000-5726000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr10:5722200-5726000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr10:5722200-5726000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr10:5722200-5726000	Weak transcription	NHDF-Ad	bronchial
8	chr10:5723400-5726000	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr10:5724400-5726000	Weak transcription	NHEK	skin
10	chr10:5724800-5726000	Enhancers	K562	blood
11	chr10:5725200-5726000	Weak transcription	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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