Variant report

Variant	rs59474262
Chromosome Location	chr10:5875245-5875246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:5874179..5876350-chr10:5894206..5896113,2	K562	blood:
2	chr10:5858242..5861090-chr10:5872989..5875709,2	MCF-7	breast:
3	chr10:5851448..5853265-chr10:5875008..5877610,2	MCF-7	breast:
4	chr10:5852230..5858723-chr10:5874443..5879399,10	K562	blood:
5	chr10:5874889..5877951-chr10:5883018..5886610,3	MCF-7	breast:
6	chr10:5874603..5876795-chr10:5886014..5887751,3	MCF-7	breast:
7	chr10:5854265..5856578-chr10:5874847..5876421,2	MCF-7	breast:
8	chr10:5869665..5872246-chr10:5873304..5875744,2	MCF-7	breast:
9	chr10:5855088..5855608-chr10:5874999..5875621,2	MCF-7	breast:
10	chr10:5871204..5872899-chr10:5874747..5877637,3	K562	blood:
11	chr10:5870260..5872899-chr10:5873504..5877637,4	K562	blood:

No data

No data

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10752093	1.00[AMR][1000 genomes]
rs2669136	1.00[AMR][1000 genomes]
rs7092600	1.00[AMR][1000 genomes]
rs73612486	1.00[AMR][1000 genomes]
rs73614613	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34147	chr10:5726821-6105717	Strong transcription Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	esv34061	chr10:5726821-6225187	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
3	nsv1042286	chr10:5795129-6578445	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
4	nsv831775	chr10:5804335-6000849	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv549896	chr10:5820394-5880066	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
6	nsv5654	chr10:5868365-5930634	Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv982902	chr10:5872818-5889953	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:5872400-5875600	Weak transcription	K562	blood
2	chr10:5873200-5882400	Weak transcription	Spleen	Spleen
3	chr10:5873400-5875600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr10:5873600-5875600	Enhancers	HepG2	liver
5	chr10:5874600-5876400	Enhancers	Placenta	Placenta
6	chr10:5874800-5875400	Enhancers	Colonic Mucosa	Colon
7	chr10:5874800-5875400	Enhancers	Gastric	stomach
8	chr10:5874800-5876000	Enhancers	Fetal Heart	heart
9	chr10:5875000-5875400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr10:5875000-5875400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:5875000-5875400	Active TSS	Duodenum Mucosa	Duodenum
12	chr10:5875000-5875400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr10:5875000-5876000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr10:5875000-5886600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr10:5875200-5875400	Enhancers	Left Ventricle	heart
16	chr10:5875200-5875800	Weak transcription	Stomach Mucosa	stomach
17	chr10:5875200-5877600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:5875200-5882200	Weak transcription	Right Atrium	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links